KEGG   Rattus norvegicus (rat): 259271
Entry
259271            CDS       T01003                                 
Symbol
Aptx
Name
(RefSeq) aprataxin
  KO
K10863  aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    259271 (Aptx)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rno03400]
    259271 (Aptx)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.1  In phosphorus-containing anhydrides
    3.6.1.70  guanosine-5'-diphospho-5'-[DNA] diphosphatase
     259271 (Aptx)
    3.6.1.71  adenosine-5'-diphospho-5'-[DNA] diphosphatase
     259271 (Aptx)
    3.6.1.72  DNA-3'-diphospho-5'-guanosine diphosphatase
     259271 (Aptx)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     259271 (Aptx)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     259271 (Aptx)
SSDB
Motif
Pfam: DcpS_C FHA_2 zf-C2HE HIT FHA Glycoamylase SAE2 FtsK_SpoIIIE_N zf-C2H2_6 zf-C2H2_4
Other DBs
NCBI-GeneID: 259271
NCBI-ProteinID: NP_683687
RGD: 628740
Ensembl: ENSRNOG00000006582
UniProt: Q8K4H4 A6IIS0
Position
5:complement(60593338..60618946)
AA seq 329 aa
MRVCWLVRQDCWHQRIKLPHLEAVVIGRSPETKITDKKCSRQQVQLKAECNKRYVNVKQM
GVNPTSIDEVVIGKDREMKLLPGQVLHMVNELYPYMVEFEEVAESPNVTQRKRKRPDCDS
QEMEAEAGASPSQCSVSPKTGKHGAAKEESLGHWSQGLKISMKDPKMQVYKDDQVVVIKD
KYPKARHHWLVLPWASISSLKVVTSEHLELLKHMHAVGEKVIADFTGSSKLRFRLGYHAI
PSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIKMVQEAGRVTVKDGTCELL
KLPLRCHECQQLLPSIPQLKEHLRKHWGG
NT seq 990 nt   +upstreamnt  +downstreamnt
atgcgggtgtgctggttggtgagacaggactgctggcaccagcgaatcaaacttccccat
ttagaagctgttgtgattggtcgaagcccggagaccaagatcacagataagaaatgttcc
cgacagcaagtacagttgaaagcggagtgtaacaagagatatgtcaacgttaagcagatg
ggggtcaatcccaccagcattgacgaagtcgtcattgggaaggaccgggagatgaagctg
ctgcctggtcaggttctccacatggtgaatgaactttatccatacatggtggagtttgag
gaggtggcagagagccctaacgtaacacagaggaagagaaagaggccagactgtgatagt
caggagatggaagctgaggctggggccagccccagccagtgctctgtgtcccctaagacg
ggcaagcatggagccgccaaggaggaatcactgggccactggagtcaaggcttgaagata
tctatgaaagaccccaaaatgcaggtttataaggatgatcaggtggtggtgattaaggat
aaataccccaaggcccggcaccactggctggtcttaccatgggcctccatttccagtctg
aaggttgtgaccagtgaacacctcgaacttctcaaacacatgcacgcagtaggggaaaag
gtgatagcagattttactggatccagcaaactgcgcttccgactgggttaccatgccatt
cccagcatgagccatgtacatcttcatgtgatcagccaggattttgattctccttgcctt
aaaaacaaaaagcattggaattctttcaatacagaatattttctggagtcacaagctgtg
atcaagatggttcaggaagctggcagagtgactgttaaagatgggacttgcgaactcttg
aagctgcctctccgttgccatgagtgtcagcagctgctgccttccatcccacagctgaag
gagcacctcaggaagcactggggcgggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (3)   
   KEGG ENZYME (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (9)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (6)   
DNA sequence (12)   
   RefSeq(nuc) (6)   
   GenBank (3)   
   EMBL (3)   
Protein domain (10)   
   Pfam (10)   
All databases (45)   

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