KEGG   Rattus norvegicus (rat): 259272
Entry
259272            CDS       T01003                                 
Symbol
Msi1
Name
(RefSeq) RNA-binding protein Musashi homolog 1
  KO
K14411  RNA-binding protein Musashi
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    259272 (Msi1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    259272 (Msi1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     259272 (Msi1)
SSDB
Motif
Pfam: RRM_1 RRM_7 PHM7_cyt Nup35_RRM_2
Other DBs
NCBI-GeneID: 259272
NCBI-ProteinID: NP_683688
RGD: 628778
Ensembl: ENSRNOG00000001156
UniProt: Q8K3P4
Position
12:complement(46815225..46911852)
AA seq 362 aa
METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT
TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE
CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT
YQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGST
PSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNG
YH
NT seq 1089 nt   +upstreamnt  +downstreamnt
atggagactgacgcgccccagcccggcctcgcctccccggactcgccgcacgacccctgc
aagatgttcatcggaggactcagttggcagaccacgcaggaagggctgcgcgaatacttc
ggccagttcggggaggtgaaagagtgtctggtgatgcgggaccccctgaccaaaagatcc
aggggtttcggcttcgtcactttcatggaccaggcgggggtggataaagtgctggcgcaa
tctcggcacgagctcgactccaaaacaattgaccccaaggtggcctttcctcggagagca
cagcctaagatggtcactcgaactaagaagatctttgtgggggggctgtctgtgaacacc
acggtggaggacgtgaagcactattttgagcagttcggaaaggtggatgatgccatgctg
atgttcgacaaaactaccaacaggcacagagggttcgggtttgtcacgttcgagagtgag
gacatcgtagagaaagtgtgtgagatccacttccatgaaatcaacaacaaaatggtggaa
tgcaagaaagctcagccaaaggaggtgatgtccccgacaggctcagcccggggccggtct
cgagtcatgccctacgggatggacgccttcatgctgggtattggcatgttaggttaccca
ggtttccaagccacgacctacgccagccggagttacacaggccttgcccctggttacacc
taccagttccccgaattccgtgtagagcggacccctctcccgagcgccccagtcctcccc
gagcttacagccatccctctcactgcttatggtccgatggcagcggcggcggcagcggcg
gctgtagtccgagggacaggctctcacccctggacgatggctccccctccaggttctact
cccagccgcacagggggcttcctggggaccacaagccccggccccatggctgagctctat
ggggcagccaaccaggactcgggggtcagcagttacatcagcgccgccagccccgccccc
agcactggttttggccacagtcttgggggtcccttgattgcgacagccttcaccaatggg
taccactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (12)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (10)   
DNA sequence (14)   
   RefSeq(nuc) (12)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (40)   

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