KEGG   Rattus norvegicus (rat): 286970
Entry
286970            CDS       T01003                                 
Symbol
Abca5
Name
(RefSeq) cholesterol transporter ABCA5
  KO
K05648  ATP-binding cassette, subfamily A (ABC1), member 5
Organism
rno  Rattus norvegicus (rat)
Pathway
rno02010  ABC transporters
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    286970 (Abca5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:rno02000]
    286970 (Abca5)
Transporters [BR:rno02000]
 ABC transporters, eukaryotic type
  ABCA (ABC1) subfamily
   ABCA5, 6, 8, 9, 10 subgroups
    286970 (Abca5)
SSDB
Motif
Pfam: ABC_tran ABC2_membrane_3 AAA_21 RsgA_GTPase AAA_29 AAA_16 AAA_23 Rad17
Other DBs
NCBI-GeneID: 286970
NCBI-ProteinID: NP_775429
RGD: 628661
Ensembl: ENSRNOG00000004378
UniProt: Q8CF82
Position
10:complement(95739610..95808633)
AA seq 1642 aa
MATAIRDVGVWRQTRTLLLKNYLVKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEE
VSDIELSPMDKSILSNLILGYTPVTNTTSSVMQRVSTDHLPDVLVTEEYASEKELLASSL
SKPSNFVGVVFKDVMSYELRFFPDMVPVSSVYMDSRAGCSKSCDAAQYWSSGFTALQASI
DAAIIQLKTNVSLWRELESTKAVIMGEAAVVEIDTFPRGVILIYLVIAFSPFGYFLAIHI
VAEKEKRLKEFLKIMGLHDTAFWLSWVLLYTSLIFLMSLLMAVIATASSLFPQSSSIVIF
LLFFLYGLSSVFFALMLTPLFKKSKHVGVVEFFVTVVFGFVGLLIVLVESFPRSLVWLFS
PLCQCAFLIGIAQVMHLEDFNEGALFSSLTEGPYPLIITLTMLALDSVFYALLAVYLDQV
IPGEFGLRRSSLYFLKPSYWSKNKRNYKELSEGNINGNISLNEIVEPVSSEFIGKEAIRI
SGIQKAYRKKNETVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI
YGHRVSEIDEMFEARKMIGICPQSDMNFDVLTVEENLSILASVKGIPANNIIQEVQKVLL
DLDMQAIKDNQAKKLSGGQKRKLSLGIAVLGNPKILLLDEPTAGMDPCSRHIVWNLLKYR
KANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSIFLKSKWGIGYRLSMYIDRYCAT
ESLSSLVRQHIPAAALLQQNDQQIVYSLPFKDMDKFSGLFSALDIHSNLGVISYGVSMTT
LEDVFLKLEVEAEIDQADYSVFTQQPREEETDSKSFDEMEQSLLILSETKASLVSTMSLW
KQQVSTIAKFHFLSLKRESKSVRSVLLLLLIFFAVQIFMFLVHHSFKNAVVPIKLVPDLY
FLKPGDKPHKYKTSLLLQNSTDSDINDLIDFFTQQNIIVAMFNDSDYVSAAPHSAALNVV
QSEKDYVFTAVFNSTMVYSLPVMMNIISNYYLYHLNVTDTIQIWSTPFIQEITDIVFKVE
LYFQAALLGIIVTAMPPYFAMENAENHKIKAYTQLKLSGLLPSAYWIGQAVVDIPLFFVV
LTLMLGSLFAFHHGLYFYPVKFLAVVFCLIAYVPSVILFTYIASFTFKKILNTKEFWSFI
YSVTALACVAVTEITFFLGYGVTAVFHYTFCIAIPIYPLLGCLISFIKGSWKNIPKTENA
YNPWDRLLVAVIMPYLQCVLWIFLLQHYEKKHGGRSIRKDPLFRALSQKAKHKKFPEPPI
NEDEDEDVKAERLKVKELMGCQCCEEKPAIMVYNLHKEYDDKKDFLHSRKTTKVATKYVS
FCVKKGEILGLLGPNGAGKSTIINILVGDVEPTSGKIFLGDYGSHSNEDDESTKCMGYCP
QTNPLWPDITLQEHFEIYGAVKGMSSGDMKEVISRITKALDLKEHLQKTVKKLPAGIKRK
LCFALSMLGNPQVTLLDEPSTGMDPRAKQHMWRAIRTAFKNKKRAALLTTHYMEEAEAVC
DRVAIMVSGQLRCIGTVQHLKSKFGKGYFLEIKLKDWIENLEIDRLQREIQYIFPNASRQ
ESFSSILAYKIPKEDVQSLSQSFAKLEEAKHTFAIEEYSFSQATLEQVFVELTKEQEEED
NSCGTLNSTLWWERRQEDRVVF
NT seq 4929 nt   +upstreamnt  +downstreamnt
atggctactgcaattagggatgtgggcgtttggagacagaccagaacacttcttctgaag
aattacctcgtcaaatgcaggactaaaaagagtagtgttcaggaaattctttttcctcta
tttttcttattttggctgatattaattagcatgatgcatccaaataagaaatatgaagaa
gtatctgatatagaactcagccctatggacaaatccatcctttccaaccttatcctgggg
tacactccagtgactaatactacaagcagcgtcatgcagagagtttctaccgatcatctt
cccgacgttctagttactgaagaatacgccagtgagaaggagctgctggcatccagtttg
tctaagcccagcaacttcgtgggtgtggttttcaaagacgtcatgtcctatgaactgcgg
ttttttcctgatatggttccagtgtcttctgtttatatggattcaagagcaggctgttca
aagtcatgtgatgctgctcagtactggtcttcagggtttacagctttacaggcctcaata
gatgctgccattatacagttgaagaccaatgtttctctgtggagggagctggagtcaacc
aaagctgtcatcatgggggaagctgcggtcgtggagattgacaccttcccacgaggggtc
atcctcatctacctcgtcatagccttctcgcccttcgggtactttctggcaattcacatt
gtagcagaaaaggaaaagaggttaaaggagtttttaaagataatgggacttcacgacact
gctttttggctgtcctgggttcttctgtacacgagtttgatcttccttatgtcccttctt
atggccgtcattgcaacagcgtcctcgttattccctcagagtagcagcatcgtgattttt
ctgctcttcttcctgtacggattgtcatctgtgttttttgctttaatgttgacgcctctt
tttaaaaaatcaaagcacgtgggagtcgttgagttttttgtcaccgtggtgtttggcttt
gtcggcctgttgatagtcctcgtagaaagtttccccaggtcgctagtgtggctcttcagt
cctttgtgtcagtgcgcctttctgattgggattgcacaggtcatgcatttagaagatttc
aatgaaggagccttattttctagtttgactgaaggcccctacccgctaattatcaccctt
accatgctcgctctggacagtgtgttctatgccctgctggctgtgtaccttgatcaggtc
atcccaggggaatttggcttgaggaggtcatctttgtacttcctaaagccatcatattgg
tcaaaaaacaaaaggaactataaggagctatcagagggcaacatcaatgggaatattagt
ctcaatgaaattgttgagcccgtttcttcagaatttataggaaaagaagctataagaata
agtggtattcagaaagcctataggaagaagaatgagaccgtggaggctttgagaaatttg
tcgtttgacatctatgaaggccagattactgctctgctgggccacagtggaacaggaaaa
agcacactaatgaatattctgtgtggactgtgcccaccttctgatgggtttgcttctata
tatggacacagagtctctgaaatagatgaaatgtttgaagcgaggaaaatgattggcata
tgtccacagtcagatatgaactttgatgttctgacagtagaagaaaatttatcaattttg
gcttcagtcaaaggaataccagccaacaacataattcaggaagtacagaaagttttactg
gatttggacatgcaagccatcaaagataatcaagcgaaaaaactaagtggtggccaaaag
agaaagctgtctttaggaattgcagttcttgggaatccaaagatcctcctgctagatgag
ccgacagcaggaatggacccctgctctcgccacattgtttggaatcttctcaagtacagg
aaggctaaccgagtgacagtcttcagcactcacttcatggatgaggccgacattcttgcc
gacaggaaagctgtcatatcacaaggaatgctgaaatgtgttggttcttcaattttcctg
aaaagtaaatggggaatcggctaccgtctgagcatgtatatagacaggtactgtgccaca
gagtcgctctcgtcgctggttagacagcacatccctgcggccgctctgctgcagcagaat
gaccagcagattgtctatagcttgcccttcaaagacatggacaaattttcaggcttgttt
tctgctctagacattcattcaaacctgggtgtaatttcttatggtgtttccatgacgaca
ttggaagacgtgtttttaaagctagaagttgaagcagaaattgaccaagcagattatagt
gtatttacccagcagccacgggaggaagaaacagattcaaagtcttttgatgaaatggaa
cagagtttacttattctctctgaaaccaaagcttctctagtgagcaccatgagtctctgg
aagcagcaagtatctacaatagcaaagtttcatttcctctcactgaagcgagaaagcaaa
tcagtgcgctctgtgttgcttctgcttttaattttttttgcagttcagatttttatgttt
ttggtccatcattcttttaaaaatgctgtggttcccatcaagctcgttccagacttgtat
tttctaaaacctggagataaacctcataaatacaaaacaagcctgctgcttcaaaattct
actgattcagatatcaatgatcttattgactttttcacacagcagaacataattgtggcc
atgtttaatgacagtgactatgtgtctgctgctcctcatagtgcggctctcaatgtggtg
cagtcagaaaaggactatgtttttactgctgttttcaacagtactatggtttattctttg
ccagtaatgatgaacatcattagtaactactatctctatcatttaaatgtgactgacact
atccagatctggagtaccccgttcattcaggaaattactgacattgtttttaaagttgag
ctatattttcaagcagctttgcttggaatcattgttactgcaatgccaccttactttgcc
atggaaaatgcagagaatcataagatcaaagcttacactcagcttaaactttcaggtctt
ttgccatccgcctactggattggacaggctgtggtggacattcccctgttttttgttgtt
ctgactttgatgctgggaagtttatttgcctttcatcacggactgtatttttatcctgta
aagtttcttgctgtggttttttgcctcattgcttatgtgccctcggttattctgttcact
tatatagcttcgttcacctttaagaaaattttaaataccaaggaattttggtcatttatc
tattctgtgacagcattggcttgtgtcgcagtcacggaaataactttctttctggggtat
ggagttacggctgtttttcattacaccttctgcatagccatcccaatctacccgctcctg
ggttgtctgatttctttcataaagggttcttggaagaatataccaaaaactgagaatgcc
tacaatccctgggacagacttttagttgctgtaatcatgccctacctgcagtgtgtactg
tggattttcctcttacaacactatgagaaaaaacatggaggcagatcaataagaaaggat
ccgcttttcagggccctctcacaaaaagccaaacataagaagtttccagaaccacccatc
aatgaggatgaagatgaagatgtcaaagcggaaaggttgaaggttaaagagctgatgggt
tgccagtgttgtgaggagaaaccggccattatggtatacaatttgcataaagaatatgat
gacaagaaagatttccttcactcaaggaaaacaacaaaagtagcaacaaaatacgtctct
ttctgtgtgaaaaaaggagagatcttgggactgttgggtccaaatggtgctggcaaaagc
acgattattaatattcttgttggggatgttgaaccaacttcaggcaagatatttctagga
gattatggttcacattcaaatgaagatgatgaatccaccaagtgtatgggttactgcccc
cagacaaacccactctggccagatattactctgcaagaacattttgaaatttatggagct
gtgaaagggatgagttcaggtgacatgaaggaagtaatcagtcgaataacaaaagccctt
gatttgaaagaacatcttcagaaaactgtaaagaaactccctgcagggatcaagcgaaag
ctgtgttttgctctcagtatgctggggaatcctcaggtgacactgctggatgagccgtct
acaggtatggaccccagagccaaacagcacatgtggcgagccattcgaactgcgtttaaa
aacaagaagcgggctgccctcctcactacgcattacatggaagaggcggaggctgtctgt
gacagggtggccatcatggtgtccgggcagctaagatgcattggaacagtacaacatcta
aagagcaagtttggcaaaggctactttttagaaattaaactaaaggactggatagaaaac
ctggaaatagatcgccttcaaagagaaattcaatatattttcccaaatgcaagccgccaa
gagagcttctcttctattctggcttataaaattccaaaagaagatgtccagtctctctca
cagtcctttgctaagttggaggaagcaaaacacacttttgccattgaagaatacagcttt
tctcaagcaaccctggaacaggtttttgtagaacttactaaggagcaggaggaggaagat
aatagctgcgggactttaaacagcacgctctggtgggaaagaaggcaggaagacagagtc
gtgttctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (8)   
   Pfam (8)   
All databases (29)   

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