KEGG   Rattus norvegicus (rat): 287249
Entry
287249            CDS       T01003                                 
Symbol
Cnot6
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    287249 (Cnot6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    287249 (Cnot6)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     287249 (Cnot6)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     287249 (Cnot6)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     287249 (Cnot6)
SSDB
Motif
Pfam: Exo_endo_phos LRR_8 LRR_4 LRR_1 LRR_6
Other DBs
NCBI-GeneID: 287249
NCBI-ProteinID: NP_001380807
RGD: 1310783
Ensembl: ENSRNOG00000054891
Position
10:complement(34479892..34532166)
AA seq 557 aa
MPKEKYEPPDPRRMYTIMSSEEAANGKKSHWAELEISGKVRSLSSSLWSLTHLTALHLSD
NSLSCIPSDIAKLHNLVYLDLSHNQIQSLPAELGNMVSLRELHLNYNQLRVLPFELGKLF
QLQTLSLKGNPLTQDILNLCLEPDGTRRLLNYLLDNLSGTAKRISTEQPPPRSWIMLQEP
DRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQE
VETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLILVANA
HMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCADLNSLPDSG
VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQLEL
LLPFLPQVNGIHLPGRR
NT seq 1674 nt   +upstreamnt  +downstreamnt
atgcccaaagaaaagtacgagccccctgaccctcggaggatgtacacaattatgtcctct
gaggaagcagcaaatggaaagaaatcacattgggcagagcttgaaataagtggaaaagta
agaagcttaagctcatctttgtggtcactaactcacttgacagctttgcatctgagtgac
aattccctgtcctgtattccttcagacattgccaagcttcacaatctggtatatctggac
ctgtcccataatcaaatccagagtttaccggcagaactcggaaacatggtatcactcagg
gagctccatttaaattacaaccagttacgagttctaccttttgagctgggaaaactgttt
cagttgcagactttaagcctgaaaggaaatccacttacccaggatatattgaacctctgt
ctggagccagatggaacaagaaggctactgaactacttgctcgataatttgtcaggtact
gcaaaaagaatttcaacagaacaaccacctccaagatcttggatcatgttacaagaacca
gacagaacaaggccaacagccttgttttctgtcatgtgctataatgttctttgtgataaa
tatgcgacccggcagttatacggctactgtccatcatgggcactaaattgggactacagg
aaaaaggccattattcaagaaattttgagctgcaatgctgatattataagtcttcaggaa
gttgaaacagagcagtattacagtttttttctggtagaactgaaagaacgtggctataat
ggattctttagtcctaagtctcgagctaggactatgtctgaacaggaaagaaagcatgtt
gatggctgtgcaatattcttcaagactgaaaaatttactttggttcagaaacacacggtt
gaatttaatcagctagcaatggcgaattcagaagggtctgaagctatgttgaacagagtc
atgacaaaggataacattggagttgccgtactgctagaacttcgaaaggaattgattgaa
atgtcatctggaaaaccacatctgggaacagaaaaacaacttattcttgtggctaatgct
catatgcattgggaccctgaatactcagacgtgaagttggtgcaaactatgatgttcctt
tcagaagtgaagaatattattgataaagcctctcggagcctcaaatccagtgtattggga
gaatgtggaactattccacttgtgttatgtgcagatctgaattctttgccagactctggt
gttgtagagtatttgagcactggtggggtagaaacaaatcataaagactttaaggaactg
agatacaatgaaagtcttacaaacttcagctgcaatgggaagaatgggatgaccaatgga
agaatcacacatggtttcaagttaaagagtgcctatgagaatggcctgatgccttacacg
aattacacatttgatttcaagggtataattgactacatcttctattctaaacctcagctg
aatactttagccatcctgggacctctggaccaccattggctagttgagaataacatcagc
ggctgcccacatccacttattccctccgaccacttctcactttttgcacaattggagctc
ttactgcctttcctgccccaagttaatggcattcaccttcctggcaggaggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (10)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (8)   
DNA sequence (13)   
   RefSeq(nuc) (9)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (40)   

Download RDF
DBGET integrated database retrieval system