KEGG   Rattus norvegicus (rat): 287530
Entry
287530            CDS       T01003                                 
Symbol
Prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
  KO
K12856  pre-mRNA-processing factor 8
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    287530 (Prpf8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    287530 (Prpf8)
Spliceosome [BR:rno03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    287530 (Prpf8)
 Complex C
   U5 SnRNP specific factors
    287530 (Prpf8)
SSDB
Motif
Pfam: PROCN PRP8_domainIV U6-snRNA_bdg PRO8NT U5_2-snRNA_bdg PROCT RRM_4 JAB
Other DBs
NCBI-GeneID: 287530
NCBI-ProteinID: NP_001178519
RGD: 1305467
Ensembl: ENSRNOG00000003495
UniProt: G3V6H2 A6HGR5
Position
10:60829778..60852887
AA seq 2335 aa
MAGVFPYRGPGNPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTVTEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
SQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq 7008 nt   +upstreamnt  +downstreamnt
atggccggagtgtttccttacagagggccgggtaacccggtgcccggccctctagccccg
ctgccggattacatgtcagaggagaagctgcaggagaaagctcgaaaatggcagcagttg
caggccaagcgctatgcagagaagcggaaattcgggtttgtggatgctcagaaggaagac
atgcccccagaacatgtcaggaaaatcattcgagaccatggagacatgaccaacaggaag
ttccgtcatgacaaaagggtctatttgggagctctcaagtacatgcctcacgcagttctc
aagctcctagagaacatgcccatgccttgggagcagatccgggatgtgcctgtgctgtac
cacatcactggagccatttccttcgttaacgagattccctgggttattgagccagtttac
atctcccagtgggggtcaatgtggatcatgatgcgtagagaaaaaagagacaggaggcat
ttcaagaggatgcgttttcccccttttgatgatgaggagccgcccctggattatgctgac
aacatcttagatgtcgagccactggaagccattcagctagagctggaccctgaggaggat
gcccctgtgttggactggttctatgaccaccagccattgagagatagtaggaagtatgtt
aatggttccacctaccaacgctggcagttcacattgcctatgatgtccactctctaccga
ctggccaaccagcttctgactgacttggtagatgacaactacttttatctctttgatcta
aaggccttctttacctctaaggcactcaacatggccattcctgggggacccaaatttgaa
cctcttgttcgagacatcaacctacaggatgaagactggaatgaattcaatgatattaac
aagatcatcatccgtcagcctattcgtactgagtacaagattgcttttccgtacctctat
aacaacctcccacaccatgtccacctgacctggtaccacactcctaacgttgtgttcatc
aagactgaggatcctgatctgccagctttctactttgatcctctgattaacccaatctcc
catagacactcagtcaagagccaagagccactacctgatgatgatgaggagtttgagctc
ccagagtttgtggagcccttcctgaaggatacacctctctatacagacaatacagccaat
ggcatcgcactgctctgggcaccacggcccttcaacctacgctctggtcgtacccgccgg
gccctcgacattccccttgtcaagaactggtatcgggagcactgtcctgctgggcaacct
gtgaaagttcgagtctcctatcagaagctgcttaagtattatgtgctgaatgccctcaaa
catcggcctcccaaagcgcagaagaagaggtatctgtttcgctctttcaaagctaccaaa
ttctttcagtctaccaagctggactgggtggaggtcgggctgcaggtttgccgccagggc
tacaacatgcttaaccttctcattcaccgtaagaacctcaactatctgcatttggactat
aacttcaacctgaagcctgtcaagacgctcaccaccaaggaaagaaaaaaatctcgcttt
gggaatgctttccatctgtgtcgggaagtactgcgtttgactaagctggttgtggatagt
catgtgcagtatcgcttgggcaatgtagatgccttccagctggcagatggattgcagtat
atatttgcccacgtgggacagttgacaggcatgtatcgatacaaatataagctgatgcgg
cagatccgcatgtgcaaggacttgaaacatctcatctattaccgcttcaacacgggtcct
gtggggaaaggccctggctgtggtttctgggctgctggctggcgggtctggctatttttt
atgcgtggaattacccctttgctagaacgatggctaggcaaccttctggcccgacagttt
gaaggccgtcactcaaagggggtggcaaagacagtaacaaagcaacgagtagagtcccat
tttgaccttgagcttagggcagctgtgatgcatgatattctggacatgatgcctgaaggc
atcaaacagaacaaggcccgaacaattctgcagcacctcagtgaggcctggcgctgctgg
aaggccaacattccatggaaggtcccaggactgccaacgcctatagagaatatgattctt
cggtacgttaaggccaaggctgattggtggaccaatactgcccactacaaccgtgaacgg
attcgccgtggggctactgtagacaagactgtttgcaaaaagaacctgggccgcctcacc
cgcctgtatctgaaggcagaacaggagcggcagcacaattacctgaaggacgggccttac
atcacagcagaggaagcagtggcagtgtatactaccactgtgcactggctggaaagccgt
aggttctctcctatcccgttccccccactctcctacaagcatgacaccaagttgcttatc
ttggctctggagcgactcaaggaagcttatagtgtgaagtctaggttaaaccagtctcag
agggaggagctgggtctgattgaacaagcctatgacaacccccatgaggctttgtcccgc
atcaagcgtcacctcctcacgcagagagcctttaaggaagtgggcattgagtttatggat
ctctatagccaccttgtgccagtgtatgatgtggaaccactggagaaaataactgatgct
tacctggaccagtacctgtggtatgaagcagataaacgccgtcttttcccgccctggatc
aagcctgctgacacagaaccccctccactgcttgtttacaagtggtgccaaggcatcaat
aacctgcaggatgtgtgggagacgagtgagggtgagtgcaatgtcatgctggagtctcgg
tttgagaagatgtatgagaagattgacctgaccctgctcaacaggctgctgcgactcatt
gtggaccacaacatagctgactacatgacagccaagaacaatgtagtcatcaactataag
gacatgaaccatacaaattcatatggaatcatcagaggcctgcagtttgcctcattcatt
gtacagtactatggtttggtgatggatttgcttgtattgggattgcaccgggccagtgag
atggctgggcctccgcagatgccaaatgactttctcagttttcaggacatagccaccgag
gctgcacacccaatccgactcttctgtagatacattgatcgcatccatattttcttcagg
ttcacagcagatgaggctcgggatctgatccagcgttacctgacagaacatccagacccc
aataatgaaaacattgttggctacaataataagaaatgctggccccgagatgcccgtatg
cgtctcatgaagcatgatgtcaacttgggtcgggcagtgttctgggacatcaaaaaccgg
ctgccacgatcggtgactacagtacagtgggagaatagctttgtgtctgtgtacagtaaa
gacaaccccaacctgctgttcaacatgtgtggctttgagtgccgcatcctacctaagtgc
cgtaccagctatgaagagttcacccacaaggacggggtctggaatctacagaatgaggtt
actaaggagcggacggctcagtgtttcctgcgtgtggacgatgagtcaatgcagcgcttc
cataaccgcgtgcggcagattctgatggcctctggctctaccactttcaccaagattgtg
aataagtggaatacagctctcattggccttatgacatactttcgagaggctgtggtgaat
acacaggaactcctagacttactggtgaagtgtgaaaacaagatccagacacgtatcaag
attggattgaactccaagatgccaagtcggttcccccctgttgtattctacacccctaag
gagctgggtgggcttggcatgctctcgatgggccatgtccttatcccccagtctgacctc
aggtggtccaagcaaacagatgtgggcatcacacactttcgttcaggaatgagtcatgaa
gaagaccaactgattcccaacttgtaccgctacatacagccatgggagagtgaattcatt
gactcccagcgggtctgggctgagtatgcactcaagcgacaggaggctattgctcagaac
agacgcttgactttagaagatttagaagactcgtgggatcggggcattccccggatcaat
accctcttccagaaagatcggcacacattggcttatgataaaggctggcgtgtccgaact
gactttaagcagtaccaggttttgaagcagaaccccttttggtggacacatcaacggcat
gatggcaagctttggaacctcaacaactaccgcacagacatgatccaggcactgggcggt
gtggagggcattctggaacacactctcttcaagggcacttacttcccaacctgggaaggt
ctgttctgggagaaagccagcgggtttgaggaatccatgaagtggaagaagctgaccaat
gctcagcgatcaggattaaaccagattcctaatcgtagatttactctctggtggtcccca
acaatcaatcgagccaatgtatacgtaggcttccaggtgcagctggacctgacaggaatc
tttatgcatggcaagatccccacgctgaagatctctctcatccagatcttccgagctcac
ttgtggcaaaagattcatgagagcatcgtgatggacttgtgtcaggtcttcgaccaggaa
ttagatgccctggaaattgagacagtacaaaaggagacaatccatccccgaaaatcctac
aagatgaactcttcctgtgcagatatactgctctttgcttcctataagtggaatgtctcc
cggccctcgctgctggcagactctaaggatgtgatggacagcaccaccacacagaagtat
tggattgacatccagttacgctggggggactatgattcccatgatattgagcgctatgcc
cgggccaagttcctggattacaccacagacaacatgagtatctacccttcacccacaggt
gtgctcattgccattgatctggcctataatctacacagtgcctatggaaactggttcccg
gggagcaagcctctcatacagcaagccatggccaagatcatgaaggcaaaccctgccttg
tatgtgttacgtgaacggatacgcaaaggattgcagctgtattcatctgagcccactgag
ccttacctgtcctctcagaactatggtgaactcttctcgaaccagattatctggtttgtg
gatgacaccaatgtctatagagtaactatccacaagacctttgaggggaacttgacaacc
aaacccatcaatggggccatcttcatcttcaatccacgcacaggacagctgttcctcaag
ataatccacacatccgtatgggctggacagaagcgtttgggtcagttggccaagtggaag
actgctgaagaagtggctgccctgatccgatctctgcctgtggaggaacagcctaaacag
attattgtcactcggaaagggatgctggatcccctggaggtacacttactggacttcccc
aatattgtgatcaaaggatcagagctccagctgcccttccaggcttgtctcaaggtggag
aagtttggggatctcatccttaaagccacagaaccacagatggttctcttcaacctctat
gatgactggctcaagactatctcatcctacacggctttctcccgtctcatcctgatcctg
cgtgctttgcatgtgaacaacgatagggcaaaagtgatcctgaagccagacaagacaacc
gttacggaaccccaccacatctggcccacgctcactgacgaggagtggatcaaggtggag
gtgcagctcaaggatctgatcttggctgactatggcaagaaaaacaatgtgaatgtggca
tcgctgacacaatcagaaattcgagacatcatcctgggaatggagatctctgcaccatcg
cagcagcggcagcagatagctgagattgagaagcagaccaaggaacagtcccagctcact
gctacacagactcgaactgtcaacaagcatggcgatgagatcatcacctccaccactagc
aactatgagacccagaccttctcgtcgaagaccgaatggagagtcagggccatctctgct
gccaacctgcatctacggaccaatcacatttatgtttcatctgatgacatcaaggagact
ggttatacgtacattcttcccaaaaatgtgctgaagaagttcatctgcatatctgatctg
cgcgcccaaattgcaggatacctatatggggtgagccctccagataaccctcaggtgaag
gagatccgctgtattgtgatggtgccacagtggggcactcaccagactgtgcacctgcct
agtcagctgcctcaacatgagtacctcaaggagatggaacccttaggttggatccacact
caacccaatgaatccccccagctatcgccccaagatgtaactactcatgccaaaatcatg
gctgacaacccatcttgggatggggagaagactattatcatcacctgcagcttcacacca
ggttcctgcacactgacagcctacaagctgacccctagcgggtatgagtggggtcggcag
aacacagacaaaggcaacaaccccaaaggctacctaccttcgcactatgagagggttcag
atgctcctgtctgaccgattcctcggcttctttatggtccctgcccagtcctcctggaac
tacaactttatgggtgttcgacatgaccccaacatgaaatacgagctgcagctagcaaac
cccaaggagttctaccatgaggtccacaggccctcccacttcctcaactttgccctcctg
caggagggtgaggtctattccgcagacagagaggacctctatgcctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (8)   
   RefSeq(nuc) (2)   
   GenBank (3)   
   EMBL (3)   
Protein domain (8)   
   Pfam (8)   
All databases (30)   

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