KEGG   Rattus norvegicus (rat): 287535
Entry
287535            CDS       T01003                                 
Symbol
Vps53
Name
(RefSeq) vacuolar protein sorting-associated protein 53 homolog
  KO
K20299  vacuolar protein sorting-associated protein 53
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    287535 (Vps53)
Membrane trafficking [BR:rno04131]
 Protein recycling
  Others
   EARP complex
    287535 (Vps53)
 Endosome - Golgi transport
  Tethering complex
   GARP complex
    287535 (Vps53)
SSDB
Motif
Pfam: Vps53_N VPS53_C Vps54_N COG4_N FBF1 GrpE Laminin_II Sec8_N XhlA NBD94 COG3_N hAT-like_RNase-H COG5_N Med11 HrpJ Snf7
Other DBs
NCBI-GeneID: 287535
NCBI-ProteinID: NP_001099283
RGD: 1311391
Ensembl: ENSRNOG00000006895
UniProt: D3ZPE5 A6HGU5
Position
10:complement(61418076..61536912)
AA seq 832 aa
MMEEEELEFVEELEAVLQLTPEVQLAIEQVFPSQDPLDQADFNAVEYINTLFPTEQSLAN
IDDVVNKIRLKIRRLDDNIRTVVRGQTNVGQDGRQALEEAQKAIQQLFGKIKDIKDKAEK
SEQMVKEITRDIKQLDHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANLLQG
VMNVLEHFHKYMGIPQIRQLSERVKAAQTELGQQILADFEEAFPSQGTKRPGGPSNVLRD
ACLVANILDPRIKQEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDRRYAWVKRQLVDYEE
KYGRMFPREWCMTERISVEFCHVTRTELSKIMRARAKEIEVKLLLFAIQRTTNFEGFLAK
RFSGCTLTDGTLKKLESPPPSTNPFLEDETAAETEELALEKGELEQPKKPKAPDNPFHGI
VSKCFEPHLYVYIESQDKNLSELIDRFVADFKAQGPPKPNTDEGGAVLPSCADLFVYYKK
CMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLPKTSSSSGGLTISSLLKEKEGSE
VARFTLEELCLICSILSTAEYCLATTQQLEEKLKEKVDVSLTERINLTGEMDTFSTVISS
SIQLLVQDLDAACDPALIAMSKMPWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTR
KYFTQFCIKFANSFIPKFITHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRK
APASYTKIVVKGMTRAEMILKVVMAPHEPLVVFVDNYIKLLTDCNTETFQKILDMKGLKR
SEQSSMLELLRQRLPAPPSGTESSSTLSLMAPTPEQESSRIRKLEKLIKKRL
NT seq 2499 nt   +upstreamnt  +downstreamnt
atgatggaggaggaggaactggagtttgtggaggagctggaggctgtgctgcagctcacg
ccagaggtgcaactagccatcgagcaggtattcccaagccaggatcctcttgatcaagct
gacttcaatgccgttgagtacatcaatactctgttcccaacagagcaatctctggcaaac
attgacgatgttgtgaacaagattagactgaaaataaggagactggatgataatatccgc
actgtcgtaagaggtcagacaaatgtgggacaggatggaaggcaagcacttgaagaagcc
cagaaagccattcagcaactctttggcaaaatcaaggatattaaagacaaagcagaaaag
tcagaacaaatggtgaaagagatcacccgagatattaagcagttagatcacgccaagcgc
cacctgaccacctcgatcacaacactgaaccacctgcacatgctggcaggcggggtggac
tccttggaagccatgaccagacgcagacagtatggagaagttgctaatctccttcagggt
gtaatgaatgttctggagcactttcacaagtacatgggaatcccacagatccgacagctt
tctgaacgggtgaaggctgcacagacagagctaggacagcaaatcctggctgattttgaa
gaagcatttccttcacagggtaccaagaggccaggaggacccagcaatgtcctgagagat
gcgtgcctggtggctaatattttggaccccagaatcaaacaagaaatcatcaaaaagttt
attaaacagcatctatcagagtatctagtactttttcaagaaaatcaagatgtcgcctgg
ctggacaaaattgacagacgttatgcctgggtaaaacgccagcttgtggactatgaagag
aagtatggtcggatgtttcctcgtgagtggtgcatgacagagagaatctcagtagaattt
tgccatgtgacgaggacagaactttccaaaatcatgcgagccagagctaaggaaattgag
gtgaagttgcttctttttgccattcagagaacaactaactttgaggggtttctcgcaaaa
cgcttctccggttgcaccttgacagatggaaccctgaaaaagctggagtccccaccgcca
tctaccaatcccttcctggaagatgagacagcagcagagacggaggagctggctctggag
aagggagagttagagcaaccaaagaagcccaaagccccagataatccatttcatggcatt
gtttccaagtgtttcgagcctcatctctacgtgtacattgagtcccaggacaaaaacctc
agtgagctgatagaccggtttgtggcagatttcaaagcccagggcccacccaagcccaac
actgatgaagggggtgctgtactccccagctgtgctgacctctttgtctactataagaag
tgcatggtacagtgctcacagctcagcacaggcgagcccatgattgccctgaccaccatc
ttccagaagtacctccgagaatacgcctggaaaatcctctctggcaacctgcctaaaacc
agcagcagcagtggggggctgaccatcagcagcctcctcaaagagaaagagggctcagaa
gtggccagattcactctggaggagctgtgtctcatctgcagcatcctgagcacagccgag
tactgtctggctaccactcagcagctagaagaaaaactcaaagaaaaagttgatgtgagt
ctgactgagcgaattaacctcacaggagaaatggacacattcagcactgtcatctccagc
agcattcagctgttggttcaagatctagatgcagcctgtgaccctgccctgattgccatg
agcaagatgccgtggcagaacgtggagcatgttggtgaccagagcccttatgtcacctct
gttattcttcacataaagcagaatgtccccatcatccgtgacaacctggcttccacacgg
aaatacttcacacagttctgcattaaatttgcaaattcgttcattcccaaattcatcacc
cacctcttcaagtgtaagccgatcagcatggtgggagcagagcagcttctgctggacacc
cactccctgaagatggtcctgctcgatctcccgtccattggctcacaggtggtgaggaag
gcccctgccagttacactaagattgtcgtgaaaggcatgacccgggctgaaatgatcctc
aaggtggtgatggcccctcatgaaccattggtagtatttgttgacaactacatcaaactc
cttacagactgcaacacagaaaccttccagaaaatactggatatgaaggggctgaagagg
agtgagcagagcagcatgctggaacttttgcggcagaggctccctgccccaccctcaggg
acagaaagttctagcacactgtccctgatggccccaacaccagagcaggaatcatcacgc
atccgaaaacttgaaaaactgattaaaaagagactgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (16)   
   Pfam (16)   
All databases (33)   

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