KEGG   Rattus norvegicus (rat): 287595
Entry
287595            CDS       T01003                                 
Symbol
Dhx40
Name
(RefSeq) probable ATP-dependent RNA helicase DHX40
  KO
K18711  ATP-dependent RNA helicase DHX40 [EC:5.6.2.6]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    287595 (Dhx40)
Enzymes [BR:rno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     287595 (Dhx40)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA processing factors
   Other processing factors
    287595 (Dhx40)
SSDB
Motif
Pfam: OB_NTP_bind DEAD Helicase_C AAA_22 HA2_C HA2_N T2SSE SLFN-g3_helicase AAA_19 DUF4685 nSTAND3 AAA_30 RuvC_1 Flavi_DEAD ResIII Helicase_RecD PhoH
Other DBs
NCBI-GeneID: 287595
NCBI-ProteinID: NP_001005873
RGD: 1359618
Ensembl: ENSRNOG00000004549
UniProt: Q5XI69 A6HHS1
Position
10:complement(72081867..72118792)
AA seq 779 aa
MSRFPAVAGRAPRRQEEGERPVELQEERPSAVRIADREEKGCTSQEGGTTPTFPIQKQRK
KLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHGMIGVTQPRKVAAISVAQRVAE
EMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLNKFSVIILDEAHERTL
TTDILFGLLKKLFQDKSPNRKEHLKVVVMSATMELAKLSAFFGNCPIFDIPGRLYPVREK
FCNLIGPRDRENTAYIQAIVKVTMDIHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVD
YDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYV
VDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTASGKCFRIYSKDFWNQCMPD
HVIPEIKRTSLTSVVLTLKCLAIHDVIRFPYLDPPNERLILEALKQLYQCDAIDRSGHVT
RLGLSMVEFPLPPHLTCAVIRAASLDCEDLLLPIAAMLSVENVFIRPVDPEYQKEAEQKH
RELAAKAGGFNDFATLAVIFEQCKSSGAPASWCQKHWIHWRCLFSAFRVEAQLRELIRKL
KQQSDFPRETFEGPKHEVLRRCLCAGYFKNVARRSVGRTFCTMDGRGSPVHIHPSSALHE
QETKLEWIIFHEVLVTTKVYARIVCPIRYEWVRDLLPKLHELNAHDLSSVARREMRDDAR
RKWTNKENVKQLKDGISKEVLKKMQRRNDDKSISDARARFLERKQQRIQDHSDTLKETG
NT seq 2340 nt   +upstreamnt  +downstreamnt
atgtcccggtttcccgccgtcgcgggcagggcgccaaggcggcaggaggagggcgagcgg
ccagtagagctccaggaagagcggccgtcagctgttcgcatcgctgacagagaagagaaa
ggatgcacatcacaggagggaggaacaactccaacgtttcctattcagaaacaaagaaaa
aagctcattcaagctgtgagggacaattcgttcctcatcgttactggaaatacaggaagt
ggtaaaacaactcaactccctaaatacctttatgaagcagggttttcacagcatggtatg
attggtgtaactcagccacggaaagtcgctgccatatcagttgctcagagggttgctgaa
gaaatgaaatgcactttgggatctaaagttggataccaagttcgttttgatgattgcagc
tccaaggaaacagcaatcaaatacatgactgatgggtgtttactcaaacatattttggga
gatccaaatcttaacaaattcagtgtcattattttggatgaagcccatgaaagaacttta
actacagatatcttatttggtttactgaagaagctgtttcaggataagtctcctaacagg
aaagaacatttaaaggtggtggtgatgtcagcaactatggagctagccaagctctctgca
ttctttggaaattgccccatatttgatatacctggaagactctatccagtcagagagaaa
ttctgcaatttgattggcccacgagacagagaaaatactgcatatattcaagcgattgtg
aaagtgaccatggatattcatttgaatgaaatggctggagacatcttagtttttctgact
ggccagtttgagatagagaagagctgtgagctgctttttcagatggcggagtctgttgac
tatgattacgatgtgcaagacaccacgctcgatggcttgttgatcctgccctgttatggc
tctatgacaacagatcaacaaaggagaatatttttgccacctccacctggaattagaaaa
tgtgttatatccaccaatatttctgcaacatctttgacaatagatgggatcaggtatgtg
gtggatggaggctttgtgaaacaattaaatcacaatccgaggttagggctggacatcctg
gaggtggttcctatatcaaaaagtgaagcattacagcgaagtggccgagctggcaggact
gcctcaggaaaatgctttaggatttatagtaaagatttttggaaccagtgtatgcctgat
catgtgatcccagagattaagagaactagtttgacatctgtagttctgacattaaagtgc
cttgccatacatgatgtcataaggtttccatatttggatccacctaatgagagacttatt
ttggaagcacttaaacagctttaccagtgtgatgctattgacaggagtggtcatgtgaca
agattgggtttatccatggtggagttccctcttcccccacatctgacgtgtgcagtgatc
agggctgcttctcttgattgtgaagatttgctgcttccaatagcagcaatgctatctgtg
gaaaatgtcttcatcagacctgttgatccagagtatcagaaggaagcagaacagaaacat
cgggaattggcagcaaaagctggaggatttaatgactttgcaactttagccgtcattttt
gaacagtgcaaatcaagtggagctccagcttcgtggtgccaaaagcactggattcactgg
cggtgcttattttctgcgttccgtgtggaagctcaacttcgggaactgatcaggaaactc
aaacagcaaagtgatttcccaagagagacttttgaaggccctaaacatgaagtactacga
agatgtctttgtgcaggctacttcaaaaatgttgctcgaagatctgttggcagaacattt
tgtacaatggatgggcgtggaagtccagttcatattcatccttcctcagcacttcatgaa
caggaaacgaaacttgaatggataatttttcatgaagtattagttaccaccaaagtctat
gcaagaattgtgtgtccaatccgttatgaatgggtgagagacttactacccaagttgcat
gaacttaatgcacatgatctgagcagtgtggctagacgtgaaatgagagacgatgcaaga
agaaaatggacaaataaggaaaatgtgaaacagctaaaggatggaatatcaaaagaagtt
ttaaagaaaatgcaaagaagaaatgatgacaaatccatatcagatgcgcgggctcgtttc
cttgagagaaagcaacagagaatccaggaccacagtgacacattaaaggaaacaggctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (17)   
   Pfam (17)   
All databases (34)   

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