KEGG   Rattus norvegicus (rat): 287596
Entry
287596            CDS       T01003                                 
Symbol
Smg8
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
  KO
K18734  protein SMG8
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    287596 (Smg8)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Other surveillance factors
     287596 (Smg8)
SSDB
Motif
Pfam: Smg8_Smg9
Other DBs
NCBI-GeneID: 287596
NCBI-ProteinID: NP_001385518
RGD: 1306862
Ensembl: ENSRNOG00000005769
Position
10:complement(72384012..72393746)
AA seq 991 aa
MAGPVSLRELLMGASAWLGSESPGGPSAEGGGNAAAAPEPPWREDEICVVGIFGKTALRL
NSEKFSLVNTVCDRQVFPLFHHQDPGDPGPGIKTKPVSVGEAGGAGDPGAAAGDSLRGGM
ATAEGNRAEPGPQDFSLLQAYYNQESKVLYLILTSICDNSQLLRACRALQSGEAGGGLSL
PHAETHEFWKHQEKLQCLSLLYLFSVCHILLLVHPTCSFDITYDRVFRALDGLRQKVLPL
LKTAIKDCPVGKDWKLNCRPCPPRLLFLFQLNGALKVEPPRSQDTAHPDKPKKHSPKRRL
QHALEDQIYRIFRKSRVLTNQSINCLFTVPANQAFVYIVPGSQEEDPIGMLLDQLRSHCT
VKDPESLLVPAPLSGPRRYQAMRQHSRQQLSFHIDSSTSSSSGQLVDFTLREFLWQHVEL
VLSKKGFDDSVGRNPQPSHFELPTYQKWISAAAKLYEVAIDGKEEDLGSPTGELTSKILS
SIKVLEGFLDIDTKFSENRCQKALPMAHSAYQSNLPHNYTMTVHKNQLAQALRVYSQHAR
GPAFHKYAMQLHEDCYKFWSNGHQLCEERSLTDQHCVHKFHSLPKSGEKPEADRNPPVLY
HNSRARSTGACNCGRKQAPRDDPFDIKAANYDFYQLLEEKCCGKLDHINFPVFEPSTPDP
APAKNEPCPTPADSDAEKLKEKEPQTQGEGTSLSLALSLGQSTDSLGTYPADPQAGGDNP
DVHGQGEVKSEKRPNLVDRQASTVEYLPGMLHSNCPKGLLPKFSSWSLVKLGPAKSYNFH
TGLDQQGFVPGTNYLMPWDIVIRTRAEDEGDLDTNSWPAPNKAIPGKRSAVVMGRGRRRD
DIARAFVGFEYEDSRGRRFMCSGPDKVMKVMGSGPKESALKALNSDMPLYILSSSQGRGL
KPHYAQLMRLFVVVPDAPLQIILMPQVQPGPPPCPVFYPEKQELTLPPDGLWVLRFPYAY
VTERGPCFPPKENVQLMSYKVLRGVLRAVTQ
NT seq 2976 nt   +upstreamnt  +downstreamnt
atggcggggccggtcagcttgcgcgagcttctcatgggggcgtcagcctggctgggctct
gagagtcccggaggtccctccgctgaaggcggggggaacgcagctgctgcgcccgagcca
ccgtggagggaggatgagatctgcgtagtgggaatcttcggcaagacggctctgcgccta
aactcagagaagttctctctggtgaacactgtgtgcgatcggcaggttttcccactcttt
caccatcaggatcctggggatccagggcctggaatcaagaccaaacctgtctctgtcgga
gaggccgggggagccggggacccgggggctgctgccggggattcacttcgcggaggtatg
gctacggcggaaggtaaccgagctgagccaggtccccaggactttagtcttctgcaggcc
tattacaatcaggaaagcaaagttctgtatcttattctcacttccatctgtgacaattca
cagcttttgcgtgcttgtcgggctctccagagcggtgaagcaggtgggggcctctcttta
ccacatgcagaaacacacgagttctggaagcatcaggagaagttgcaatgtctcagtctc
ctttacctcttctctgtctgtcatatcttgctcctggttcatccgacttgttcctttgac
atcacttatgatcgagtattcagagccctggatggactgagacagaaagtactacccctc
ctcaaaacagccatcaaggattgtcctgttggcaaagattggaagttaaattgccgacct
tgcccacctagactccttttcctctttcaactcaatggagcccttaaggtggaaccccct
cggagccaagatacagctcatccagataaacccaagaagcactctcccaagagaagactg
cagcatgccctggaggatcagatctatagaatcttccgcaagagtcgagtcttgacgaat
cagagtatcaactgcctctttacagtacctgccaaccaagcttttgtgtacatagtcccc
ggaagccaggaggaggacccaatcggcatgctgctggaccaacttaggagccattgtacc
gtgaaagaccctgaatctttgttggtgcccgcacccctttctggacctaggcggtaccaa
gcgatgagacagcacagccggcagcagctttccttccacattgatagtagcacctcgagt
tcttcaggccagctagtggatttcactcttcgagaattcctgtggcagcacgtggagctg
gtcctgagcaaaaaaggttttgatgacagtgtgggcaggaacccacagccttcccatttt
gaactgcctacttaccagaagtggatctccgcagctgcaaagctgtatgaggtggctatc
gatgggaaggaagaggacttgggctcacccactggggagctaacatctaagattttaagc
agtattaaagtcttagaagggtttttggatatagacacaaagttctcagaaaaccggtgc
caaaaagctttgcccatggctcacagtgcctaccagtcaaacttgccgcacaattacacc
atgacagtccataagaatcagctcgctcaggctcttcgggtatacagtcaacatgctcga
ggtccagcctttcacaaatacgccatgcagttgcacgaagactgctacaaattttggagc
aatggccatcagctctgtgaagagaggagtttgaccgaccaacactgtgtacacaaattt
cactccttacctaaatcaggagaaaaaccagaggcagataggaaccctcctgtgctctac
cacaacagccgagcccgctccactggagcctgcaactgtggaaggaagcaggcccctcga
gacgaccccttcgatatcaaggctgctaactatgacttttaccagcttctggaagaaaaa
tgttgtgggaaattggatcatatcaattttcctgtatttgagccaagtactccagaccct
gctccggctaaaaatgagccctgtcccaccccagcagactcggatgccgagaaactgaaa
gagaaagaacctcaaacccaaggagagggcacaagcctcagtctggctttgagcctgggc
cagtcaacagacagcctaggcacctacccagctgatccgcaggcaggaggagacaaccca
gacgtgcatgggcaaggagaagtaaaatctgagaagagaccaaacttggttgaccggcag
gcatccacagttgaatatctcccaggcatgctacattcaaattgcccaaaaggcctctta
cccaaattctccagttggtctttggttaaactaggcccagccaagtcttacaactttcat
acaggtttggaccaacagggctttgtcccaggaacaaactatcttatgccttgggacatt
gtcatcaggactagagctgaagacgaaggagacttagacacgaactcctggcctgctcca
aataaagctattcctggaaagagaagtgcggttgtgatgggcagaggaaggcggagggat
gacatagctcgagcttttgttggctttgagtatgaagactctcgaggtcggagattcatg
tgctcagggcctgacaaagtaatgaaagtgatgggaagtggaccgaaggagtcggcttta
aaagccctcaacagcgacatgcccctgtacatcctgtcctcgtcgcagggcagagggctg
aagccacactatgctcaacttatgaggctttttgttgtagttcctgacgctcctttgcag
ataatactgatgcctcaggttcaaccaggcccaccaccgtgtccagtattttacccagaa
aaacaagagctcactctcccacctgatggcctttgggtcttgagatttccttatgcatat
gtgactgagagaggaccttgtttccctcctaaggagaacgtgcagctcatgagctacaag
gtgctccgaggagtcctcagagcagttacacaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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