KEGG   Rattus norvegicus (rat): 287608
Entry
287608            CDS       T01003                                 
Symbol
Supt4h1
Name
(RefSeq) transcription elongation factor SPT4
  KO
K15171  transcription elongation factor SPT4
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    287608 (Supt4h1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    287608 (Supt4h1)
   03019 Messenger RNA biogenesis [BR:rno03019]
    287608 (Supt4h1)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     287608 (Supt4h1)
  RNA polymerase I system
     287608 (Supt4h1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     287608 (Supt4h1)
SSDB
Motif
Pfam: Spt4
Other DBs
NCBI-GeneID: 287608
NCBI-ProteinID: NP_001099298
RGD: 1306372
Ensembl: ENSRNOG00000007845
UniProt: F7F5Z5 B5DEM7
Position
10:73036560..73042821
AA seq 117 aa
MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI
IAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTAIKT
NT seq 354 nt   +upstreamnt  +downstreamnt
atggccctggagacggtgccaaaggacctgcggcatctgcgagcttgtttgctgtgctcg
ttagtcaagactatagaccagtttgaatatgatgggtgtgacaattgcgatgcataccta
caaatgaagggcaacagagagatggtgtacgactgcaccagctcttcatttgatggaatc
atcgcgatgatgagtccagaggacagctgggtctccaagtggcagcgcgtcagtaacttt
aagccaggtgtatatgctgtgtcagtcactggtcgtctgccccaaggaattgtgcgggag
ctgaaaagtcgaggagtggcctacaaatcgagagacacagcaataaagacctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (9)   
   UniProt (2)   
   RefSeq(pep) (7)   
DNA sequence (19)   
   RefSeq(nuc) (7)   
   GenBank (6)   
   EMBL (6)   
Protein domain (1)   
   Pfam (1)   
All databases (40)   

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