KEGG   Rattus norvegicus (rat): 287739
Entry
287739            CDS       T01003                                 
Symbol
Eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform 1
  KO
K12852  116 kDa U5 small nuclear ribonucleoprotein component
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    287739 (Eftud2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    287739 (Eftud2)
Spliceosome [BR:rno03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    287739 (Eftud2)
 Complex C
   U5 SnRNP specific factors
    287739 (Eftud2)
SSDB
Motif
Pfam: GTP_EFTU EFTUD2 EFG_C EFG_IV GTP_EFTU_D2 EFG_III
Other DBs
NCBI-GeneID: 287739
NCBI-ProteinID: NP_001385527
RGD: 1560116
Ensembl: ENSRNOG00000002818
Position
10:complement(88304992..88352229)
AA seq 972 aa
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDEDEDEDDVGEHDDDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PSSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq 2919 nt   +upstreamnt  +downstreamnt
atggatactgacttgtatgatgaatttgggaattatatcggaccagagcttgattctgat
gaagatgacgatgaactgggaagagagacaaaagatcttgatgagatggatgaggatgag
gacgaggatgatgtgggcgagcacgatgatgaccaccctgggatggaggtggtgctacat
gaggacaagaagtactaccctacagccgaggaggtgtatggccctgaggtggagaccata
gtccaggaggaggacacccagcccctcacagagcctattataaagccagtgaaaaccaag
aaattcactctgatggagcagacattacctgtcacggtgtatgagatggatttcttagca
gatctgatggacaactctgagctcatccgaaatgtgaccttgtgtggccatctccaccat
ggcaagacctgttttgtagattgtttaatagaacagacgcatccggaaatcagaaagcgc
tatgatcaagatctatgctatactgacatcctcttcacagaacaagagagaggcgtcggc
atcaagagtactcctgtgacggtggtgctgccggacaccaaagggaagtcttacctcttc
aacatcatggacacaccaggtcatgtgaatttttctgatgaggtcacagctggcttgcgc
atctcagatggagtggtccttttcattgacgctgctgagggggtgatgctgaacacggag
cggctgatcaaacacgcagtgcaggaaaggctggcagtcaccgtgtgtatcaacaaaatc
gaccggctgatcttggagctgaagctgcctcccacagatgcttattacaagctacggcac
attgtggatgaggtcaatggcttaataagcatgtattccaccgacgagaacctgatcctt
tccccgctcctgggcaacgtctgcttctccagttcccagtacagcatctgcttcacactg
ggctcctttgccaagatctatgctgacacctttggtgacattaattaccaggaatttgct
aaaagactctggggtgacatctacttcaatcctaagacgagaaagttcacaaaaaaggct
ccaagcagcagctcccagaggagcttcgtggagttcatcttggagcctctctataagatc
ctggcacaggtggtgggtgatgtggacaccagcctgccaaggacactggacgagctcggc
atccacctgaccaaggaagaactgaagctaaacatccgccccctgctcaggctggtctgc
aaaaagttcttcggcgagttcaccggctttgtggacatgtgtgtgcagcacattccatct
ccaaaggtgggcgccaaacccaagatcgagcatacctacactggcggcgtggactctgac
cttggcgaggccatgagtgactgtgacccggatggtcccctgatgtgccatactactaag
atgtacagcacagatgatggagttcagtttcacgcctttggccgggtcctgagtggcacc
atccatgctgggcagcctgtaaaggtgctgggggagaactacactctggaagacgaagaa
gattcccagatatgcactgtgggccgcctttggatctccgtcgccaggtaccacattgag
gtgaatcgtgttcctgctggcaactgggttctgatagaaggtgttgatcagccaattgtg
aagacagcaaccataactgaaccccgaggcaatgaggaggctcagattttccgacccttg
aaattcaataccacatctgttatcaagattgctgtggagccagtcaacccctcagagctg
cccaaaatgcttgatggcctgcgcaaggtcaacaagagctacccgtctcttaccaccaag
gtggaagagtctggtgagcacgtgatcctgggcactggggagctctacctggactgcgtg
atgcacgaccttcggaagatgtactccgagatcgacatcaaggtggctgacccagttgtg
acgttttgtgagaccgtggtagagacatcctccctcaaatgctttgctgaaacacccaat
aagaagaacaagatcaccatgattgctgagcctcttgagaagggcctcgctgaggacata
gagaacgaggtggtccagatcacctggaacagaaagaagctgggagagttcttccaaaca
aagtacgactgggatctgctggccgcccgttctatctgggcctttggtcctgatgctaca
ggccccaacatcctagtggacgacacgttgccctcagaggtagacaaggcccttctgggc
tcagtgaaggacagcattgttcaaggtttccagtgggggaccagggaaggacccctctgc
gatgaattgattcggaatgtcaagtttaagattctggatgctgtggttgcccaggaaccc
ctgcaccggggcggaggtcagatcatccccacagccaggagggtagtgtactctgccttc
ctcatggccactccccgcctgatggagccctactactttgtagaggtccaggctcctgca
gattgtgtgtctgctgtttacacagtcctggccaggcgcaggggtcatgtgactcaggat
gcacccattccaggctcccctctctacaccatcaaagcgttcatcccagccattgactca
ttcggctttgagactgatctccgcactcatacccagggacaggccttctctctgtctgtc
ttccaccattggcagattgtccccggtgatccgctggacaagagcattgttatccgtccc
ttggagccacagccagctcctcacctggctcgggagttcatgatcaaaacccgccgtagg
aagggcctgagtgaagatgtgagcatcagcaagttcttcgatgaccctatgctgctggag
ctcgccaagcaggatgtcgtgctcaattatcccatgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (7)   
   RefSeq(nuc) (5)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (28)   

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