KEGG   Rattus norvegicus (rat): 287768
Entry
287768            CDS       T01003                                 
Symbol
Smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    287768 (Smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    287768 (Smndc1)
Spliceosome [BR:rno03041]
 Complex A
  U2 snRNP components
   U2 related factors
    287768 (Smndc1)
 Complex B
    287768 (Smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    287768 (Smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR
Other DBs
NCBI-GeneID: 287768
NCBI-ProteinID: NP_001020571
RGD: 1309151
Ensembl: ENSRNOG00000014833
Vega: OTTRNOG00000000779
UniProt: Q4QQU6 A6JHV2
Position
1:complement(262395034..262406104)
AA seq 238 aa
MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLTS
SDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLL
NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcagaggatctagcaaaacagttggccagctacaaagctcaactccagcaagtagaa
gctgctctatcgggaaatggagaaaatgaagatctgctgaaactgaagaaggatttgcaa
gaagtcatagaactgaccaaagaccttctgtcaactcagccttcggaaactctcacaagt
tcagacagctttgcttctactcagcccactcattcatggaaagtaggggacaagtgcatg
gccgtctggagtgaagatggacagtgttatgaggcggagatcgaggagatcgatgaagag
aacggcaccgctgcgatcaccttcgctgtctatggcaatgccgaagtgactccattgttg
aacctcaagcctgtagaggaaggaaggaaagcaaaagaggacagcggcaacaaacccatg
tcaaaaaaagaaatgattgcccagcagcgtgaatataaaaagaaaaaagctttgaaaaaa
gcacagagaataaaagagcttgagcaggagcgagaggaccagaaggtgaaatggcagcag
ttcaacaacagggcgtactcgaaaaacaagaaaggccaggtaaagaggagtatttttgct
tcgccagaaagtgtaacgggcaaagtcggagtaggaacttgtggaattgctgacaagccc
atgacacagtatcaagatacatccaaatacaatgtcaggcatttgatgcctcagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (9)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (6)   
DNA sequence (21)   
   RefSeq(nuc) (7)   
   GenBank (7)   
   EMBL (7)   
Protein domain (2)   
   Pfam (2)   
All databases (43)   

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