KEGG   Rattus norvegicus (rat): 287773
Entry
287773            CDS       T01003                                 
Symbol
Helz
Name
(RefSeq) probable helicase with zinc finger domain
  KO
K25168  helicase with zinc finger domain [EC:3.6.4.-]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    287773 (Helz)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    Other 5'-3' decay factors
     287773 (Helz)
   3'-5' decay
    Other 3'-5' decay factors
     287773 (Helz)
SSDB
Motif
Pfam: AAA_12 AAA_11 AAA_19 zf-CCCH UvrD-helicase AAA_30 ResIII PhoH PAM2 zf_CCCH_4 Mov-10_helical zf-CCCH_4 AAA_22 AAA_7 AAA_16 AAA_5 Bac_DnaA Mg_chelatase
Other DBs
NCBI-GeneID: 287773
NCBI-ProteinID: NP_001099318
RGD: 1307049
Ensembl: ENSRNOG00000003213
UniProt: D4ADZ6
Position
10:92979039..93144868
AA seq 1964 aa
MEDRRAERSCEQACASLQRQDYDMALQHCTDALLSLGQYSMTDFAGPCPVEIERIKIESL
LYRIASFLQLKNYGQADEDCRHVLGEGLAKGESAFRAVLCCMQLKGKLQPVSSILAQSLS
GESLNGMVTKDLTRLKTLLAETETATSNAPSGCHVEDLDEGSCNGWHFRPPPRGITSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELAEWQKRYASRLIKLKQQSENKQLSGSYMETLI
EKWMSSLSPEKVLSECLEGVQVEHSPDLSVTVNTKKSHQTWTFALTCKPARMLCRVALLY
DAHRPHFSIIAISAGDSTAQVSQEVPENCQEWIGGEMAQNGLDHYVYKVGIAFNTEIFGT
FRQTIVFDFGLEPVLMQRVMIDAASTEDLEYLMHAKQQLVTTARRWEPSSKTIVDFEPNE
TTDWEKSLLIRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSRFNL
KVQLQILASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTRVNAVYLLPVP
KEKLVQSQGTKEKVYEATIEEKTKDYVFLRISRECCEELSLRPDCDTQVELQFQLNRLPL
CEMHYALDRIKDNGVLFPDISMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLCIQ
LPPVLIIGPYGTGKTFTLAQAVKHILQQQETSRILICTHSNSAADLYIKDYLHPYVEAGN
AQARPLRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQYLC
QLDLEPGFFTHILLDEAAQAMECETIMPLALATKNTRIVLAGDHMQLSPFVYSEFARERN
LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYP
LTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ
VFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDS
TEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPVALCSIGRCRKFWERFIALCHENHSLHG
ITFEQIKAQLEALELKKTYVLNPLAPEFIPRAFRLQHSGNSSRQQQSPPKVKSLHHPQND
HFQNDGIVQPNPSVLIGNPIRAYTPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVY
GGNVVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLHTHGRGSPIPYGLGHHPPV
NLGQPQNQHAEKDQQEQNRNGKTDTNNPGPEINKIRTPEKKPTEPKQIDLESNPQNRSPE
SRPGVVYSNTKFPRKDNLNPRHINLPLPAPHTQYAIPSRHFHPLPQLPRPPFPISQQHTL
LNQQQNNLPEQPNQMTPQPNQVAPQPNQMAPQPNQMAPQPNQVVQQQNQAPPQAPQPAPQ
LSPAFQAGPTNAFFNNAVAHRPQSPAAEAVGPEQQVPPGLSDGHSPLRAITQPGPILASP
LNNFVDESSPGLPIEEALDRVHGSVALETLRQQQARLQQWSEHHAYLSQGGIPYSHHHHP
HLAHLPQTPISLHQPPVRAEWKVAGRADDETETTFSRFQDLLRELSHRDQGDTGELAEMP
PPQSRLLQYRQVQPRSPPAVPSPPSSTDHSSHFANFNDNSRDIEVANSPAFPQRLPPQLF
GPPYSLQSEHLAPPPLKYLAPEGAWNFANLQQNHLIGPGFPYGLPPLPPRPPQNPFIHIQ
NHQHAVGQEPFHPLPSRAVSSSSLPSLEEYEPRGPGRPLYQRRISSGAAQPCVEEASTPQ
DSLAQGKEPQDHSNPPGFGFPAPESWANTTSSAPYQNIPCNGSSRTSQPRELIVPPKTVK
PPEDQLKPDSGEVSSSFNYSVLQHLGQFPPLMPNKQIAESANSSSQQSPAGSKPAMSYAS
ALRAPPKPRPPPEQAKKGSDPLSLFQELSLGSSPGSNGFYSYFK
NT seq 5895 nt   +upstreamnt  +downstreamnt
atggaagacagaagagctgaaaggtcatgtgaacaagcgtgcgcgtcactgcagaggcag
gactatgacatggccctccagcattgcacagacgccctgctctctcttggccagtactcc
atgacagacttcgcagggccgtgcccagtggagattgagcgcatcaaaatcgagagtctt
ctgtacagaattgcctcattcttgcagttgaaaaactacgggcaagctgatgaagattgt
aggcatgtgctgggggaaggactggccaagggagagagcgccttccgggcagtgctgtgc
tgcatgcagctgaaggggaagctccagcctgtgtcctccatccttgcccagtcactgtca
ggggagtctctgaatgggatggtaacgaaggatttgacaagactcaagacacttctcgca
gagacagagacagcaacaagtaatgccccctctggctgtcatgtggaagacttagatgaa
gggtcttgtaatggttggcatttccgcccaccgcccagggggatcaccagcagtgaggag
tacaccttgtgtaaaaggtttttagagcaagggatctgtaggtacggtgcccagtgtact
tcagcacattcccaggaagaactagcagaatggcagaagagatatgcctcgcggctgata
aaactgaagcagcagagtgagaacaaacagctctcaggcagctacatggagaccttgata
gaaaagtggatgagctcactgtcccctgagaaagtgcttagcgaatgcctagagggagtc
caggtggagcacagccctgacctgtcagtcaccgtcaacaccaaaaagtcccaccagaca
tggacctttgctctgacctgtaagcctgcaagaatgctgtgtcgggtagccttgctctat
gatgctcatcgtcctcattttagtatcattgccatatctgccggagatagtactgcccag
gtatcacaagaagtccccgagaactgtcaagaatggataggaggagagatggcccaaaat
ggattagatcattacgtgtataaagtcgggatagcatttaacacagaaatatttggaact
tttcgccaaaccatagttttcgactttggattggagccagtactcatgcaaagagtaatg
attgacgcagcttctacagaagatcttgagtacctgatgcatgccaagcagcagctggta
accacagccaggcgctgggagccttcctccaagactattgtagactttgaacctaacgag
actactgattgggagaagagccttttgatcagataccaaattcctctctctgctgaccag
ctgtttacacagtccgttttagacaaatccttgaccaagactaactatcagtcacggcta
cacgacctgctttatattgaggagatagcccagtataaagaagtcagcaggttcaacctt
aaggtgcagctgcagatcttagcaagcttcatgctcactggagtttctgggggtgcaaag
tatgctcagaatggacaactttttggtcgttttaaacttactgaaaccctgtctgaagac
actttggctggacgactggtgatgaccagggtcaatgctgtttatttattaccagtccct
aaagagaagctcgtccagtcccagggaaccaaagagaaggtttatgaagctactattgaa
gaaaaaacaaaagactatgtatttttaaggatatccagggaatgctgtgaagagctcagt
ctgcggcctgactgtgacacccaggttgagcttcagtttcagttgaaccgattacccctc
tgtgaaatgcattatgcactagacaggattaaggacaatggtgttttgtttccagacatc
agtatgactcccactataccttggagtcccaacagacagtgggatgagcagttggatcct
cgactaaatgcaaagcagaaagaagctgtgctggccatcaccactccgctctgcatccag
ctgccccccgttcttatcattggaccctacgggacgggtaaaaccttcactctggctcag
gccgtcaagcacatactgcagcagcaggagacgagcaggattctcatttgcacccattct
aatagtgctgctgacctctacataaaggattatttacatccctatgtagaagcaggcaat
gcccaggcaagacctctcagggtgtatttccgaaatcgctgggtgaagactgttcacccg
gttgtgcatcagtactgtttgatctcaagcgcacactccacctttcagatgccccagaag
gaagatattcttaaacatcgagtggtggtggtcacactgaacacttcccagtacctctgc
cagctggaccttgaacctgggttcttcacgcacattctgttagatgaagctgcccaggcc
atggagtgtgagaccattatgcctctagccttagcaactaaaaacacacggattgttttg
gctggtgaccatatgcagctcagtccttttgtttacagcgagtttgccagggagagaaac
cttcatgtttcattacttgatcgactctacgagcattaccctgccgagtttccatgcagg
atcctcctctgtgagaactatcgctcccatgaagctatcatcaactatacctctgagctc
ttctatgagggtaaactgatggccagtggaaagcagccagcacacaaggacttctaccca
ctgacgttctttacagcacgaggggaggacgtccaagagaagaacagcacggcattctat
aacaatgcagaggtatttgaagtggtggagcgtgtggaagagctaagacggaagtggcca
gtggcatgggggaagttagacgacggcagcattggtgtggtgacaccatacgctgatcag
gtgttcagaatacgagctgaacttcggaagaagaggctctcggacgtgaatgtagaaagg
gtgctcaatgtccaaggaaagcaattcagagttctgtttcttagcacagtgcgtacacgc
cacacttgcaagcataagcagacgccaattaaaaagaaagagcaacttctggaagactcc
accgaggacttagattacgggtttctatccaactacaaacttctcaataccgccattacc
agagcacagtccctggttgctgtggtgggcgaccccgttgctctgtgctctattggaagg
tgtagaaagttttgggagcggtttattgccctgtgtcatgaaaaccacagcttgcacggg
atcacattcgaacagatcaaggcccagttagaggctttagagctcaagaagacttacgtg
ttgaacccactggctcctgaatttattccccgggctttcagactgcagcattcaggaaac
agtagcagacagcagcagtcaccacccaaggtgaaaagcctccatcatccccagaatgac
catttccagaatgatggaattgttcagcccaacccttccgtacttattggcaatcctatt
agagcatatactcctccaccccctcttggaccgcacccaaacttggggaaatctccaagc
cccgttcaaagaatagaccctcacactgggactagtattctttacgttcctgctgtctat
ggagggaatgtagttatgtcggtgcctttacctgtgccgtggacagggtaccagggtagg
tttgcagttgatcctcggattattacacaccaggcagcgatggcctacaatatgaatttg
ttacacacacatgggcgtgggtcgccaatcccttatggtcttggacatcacccacctgtc
aacctaggccagccacagaatcagcacgcagagaaggatcaacaggagcaaaatcgaaac
ggtaaaactgatacaaataacccaggacctgaaattaataagatccgaacaccagagaaa
aaacctacagaacccaaacagattgatttggaatcaaatccacagaacagaagtcctgaa
tcccgtcctggtgttgtttattccaatactaaatttcctcgaaaagataatctcaaccca
agacacataaatcttcctcttcctgcgccacatacacagtatgcaatccctagccgccat
tttcatccgcttcctcagctacccaggccaccatttcccatttcccagcagcacacctta
ttaaatcagcagcagaataatttgcctgaacaaccaaatcagatgacacctcagccaaat
caggtggcaccccagccaaatcagatggcaccccagccaaatcagatggcaccccagcca
aatcaggtggtccagcagcagaaccaggcacctccacaggctccacagccagcacctcaa
ctctctcctgcatttcaggcggggcccaccaatgcatttttcaataatgcagttgctcat
cgaccacagtctcctgctgcagaggctgtgggtcctgagcagcaggtgcctcctgggctg
tccgacggccacagtccactgagagccatcacacagcctggccccatcctagcatcacct
ttgaacaactttgttgatgagagctctccaggattgcctatagaagaagctttggatcga
gtgcatggaagtgtagctctggagacactgaggcagcagcaggcacggctacagcagtgg
agtgagcaccatgcctacctgagccagggtggcatcccgtattcacaccatcaccatcct
cacctcgcccatcttccccagactcccattagcctccaccagccaccagtgagagcagag
tggaaagtcgccggcagggctgacgatgaaacagagacaacattctcaaggtttcaagac
ttactcagagagctgtcccatcgggatcaaggtgacactggagagctagctgaaatgcca
ccgcctcagtcaagacttctgcagtacagacaagtgcagcctcgaagcccaccagcagtc
ccgtcgcccccttcctctacagaccacagtagccactttgctaactttaatgacaacagc
agagacatcgaagtagccaacagcccagcattcccacagcgcctcccacctcagctattc
ggccccccttattcgttgcaatctgaacaccttgcccctccccctctgaaatacctggct
ccggaaggagcatggaattttgctaacttgcagcagaatcatttaatagggccgggcttt
ccctatggcctacctccattgcctccccggccaccacagaacccttttatacacatccag
aaccatcaacacgctgttggtcaagagccatttcacccactgccatctcgagcagtgtct
tcttcttcgctccccagcctagaagagtatgagcccagaggacctggtcggcccttgtac
caaagaagaatctcatctggcgcagcccagccttgtgtggaagaggccagcactccccaa
gacagcctggctcagggcaaagaaccgcaggaccacagtaacccacctgggttcggcttc
ccagcccccgagtcctgggccaacaccacctcatctgccccctaccagaacattccatgc
aatggatccagcaggacaagtcagcccagagagttgatagttccacccaagactgtcaaa
ccccctgaggatcagctgaagcctgacagtggggaggtgtccagttccttcaactactcg
gtgctgcagcacctcggccagttcccacccctcatgcccaacaagcagatcgcggagtct
gccaacagcagcagccagcagagcccggcagggagcaagcccgccatgtcctatgccagt
gcgctacgggccccgcccaagcccaggcctccgcccgagcaggccaagaagggcagcgac
ccactgtccctgttccaggagctcagcttgggcagcagcccgggaagcaatggcttctac
tcctacttcaagtga

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