KEGG   Rattus norvegicus (rat): 287824
Entry
287824            CDS       T01003                                 
Symbol
Trim80
Name
(RefSeq) tripartite motif protein 80
  KO
K12023  tripartite motif-containing protein 47
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    287824 (Trim80)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    287824 (Trim80)
SSDB
Motif
Pfam: zf-C3HC4_4 SPRY zf-RING_UBOX zf-B_box zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_2 zf-RING_5 zf-Nse zf-RING_6 Sina_RING
Other DBs
NCBI-GeneID: 287824
NCBI-ProteinID: NP_001395539
RGD: 1311352
Ensembl: ENSRNOG00000028812
Position
10:101181797..101190122
AA seq 623 aa
MKQQPQRTVRRRRSPVHRAAKYLAVIDMQKISRPTQDKSPSELSTQSSRTSLQLLMSSNS
SQHLLEDQVLCPICLDVFRNPVTTACGHNFCMTCLQSFWDHQADTGETYYCPQCREAFPS
RPRLCKNVILGEMVACFTLAKSQTSGPLWGLAGPTDVPCDFCSPQKLKATKSCLQCMASL
CEKHLHSHFEDPLFQEHQLLDPVWDLKNRLCRKHRKLRQMYCRTEGSCVCGACLLEEHQN
HDTTPLEDERARKEVEVRKIQANVENQMLIIASDSQKHQGRVSFLSKLIQTMREEVNTCF
SEILHEVKQLQMKVLDFVENEETVALGMLGNSMQQSHSRLLKLEGDSVWLHGLLANKSDE
QFLQEFPTLKHFPACVEPLLGTNCEETQSFLQLPETLAQLRIRLMDIGLNFINQLLLKGI
RMNSYEVLPATVDRKTLLQNYCNLNFDSSMASEELFLFKETHSVLNLGILLEPSTTSPLP
GFKQWPQVLCCPGLSEGCHYWETEVSDSWMCLGVTYRRNPSMSGRHRRNIVYLLGRNPYS
WCLEWDSLKFSVWHNNTQTVLHGSYHHTLGVALDFRAGCLSFYGVAGDVSLLYRFLTSFL
EPLYPAVMVSSGASLTLKQYPEA
NT seq 1872 nt   +upstreamnt  +downstreamnt
atgaaacagcagccacagagaacggtgagaagacggcggtcaccagtccacagggcagcg
aagtatctggctgtcatagacatgcagaagatctcacgaccaacccaggacaaatccccc
tcagagctctctacccagtcctccagaacctcactccagctcctgatgagcagcaacagc
agtcaacacttgttggaagaccaagtcctctgtcccatttgcctggatgtgttccgcaac
ccggtcaccaccgcctgcggccacaacttctgcatgacatgccttcagagtttctgggac
caccaggctgacactggagagacttactattgcccccagtgcagagaggcctttccgagc
aggccccgcctctgcaagaacgtcattctcggagagatggtggcttgtttcaccctggcc
aagagccagacctcagggcccttgtggggcctggctggccccacagatgtgccctgtgac
ttttgctctcctcagaagctgaaggcaaccaagtcgtgcctgcagtgcatggcttccttg
tgcgagaagcatctgcacagccattttgaggacccgttgttccaggaacaccagctgttg
gacccggtgtgggacctcaagaaccgcttgtgccgtaagcatcgcaagctccggcagatg
tactgccgcaccgagggcagctgcgtgtgcggggcctgcctcctggaggagcaccagaac
cacgacacaaccccgctggaggatgaacgggcccgcaaggaggtggaagttcggaagatt
caggccaatgtggagaatcaaatgctaatcattgcctcggacagccagaaacaccaggga
cgagtgagtttcctctcgaaactgattcagacgatgcgagaagaggtgaacacctgcttc
tcagagatcctccatgaggttaaacagctgcagatgaaggtcttggattttgtggagaat
gaggagacagttgccctgggaatgctgggtaactccatgcaacaaagccacagccggctc
ctgaagttggagggggacagcgtctggctccacggcctgctggccaacaagagcgatgag
cagtttctacaggagttccccacactgaagcacttccctgcctgcgtggaacccttacta
ggcaccaactgtgaggagacacagagcttcctccagctgccagagaccctggcccagctc
cgcatcaggctgatggacataggtcttaacttcatcaaccagctgctcttgaagggcatc
aggatgaactcctatgaggtgctgccagcaactgtggacagaaagacactactccagaat
tactgcaacctgaactttgactcctccatggccagcgaagagctgttcttgttcaaggaa
acgcactcggtgttgaacttgggcatccttctggagccctcgaccaccagccctttaccg
ggcttcaagcagtggccccaggttctgtgctgcccaggcctgtcggaaggctgtcactac
tgggagaccgaggtgtccgactcgtggatgtgcctgggagtcacctaccgtcgcaaccct
tcgatgagcggtcgccaccgtcgcaacatcgtctacctgctgggccgcaacccctattcg
tggtgtctggagtgggactctctcaagttctccgtgtggcataacaacacgcagacggtg
ctgcacggctcctaccaccacacgctcggcgtagcgctggacttcagggccggctgcctg
tccttctatggcgtggcgggcgacgtgagcctgctctaccgcttcctcacctccttcctc
gaacctctgtaccccgcggtcatggtcagcagcggagcctcgctcacactcaagcagtac
cccgaggcatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (13)   
   Pfam (13)   
All databases (52)   

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