KEGG   Rattus norvegicus (rat): 287830
Entry
287830            CDS       T01003                                 
Symbol
Nup85
Name
(RefSeq) nuclear pore complex protein Nup85
  KO
K14304  nuclear pore complex protein Nup85
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03013  Nucleocytoplasmic transport
rno05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    287830 (Nup85)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    287830 (Nup85)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    287830 (Nup85)
   03036 Chromosome and associated proteins [BR:rno03036]
    287830 (Nup85)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     287830 (Nup85)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    287830 (Nup85)
SSDB
Motif
Pfam: Nucleopor_Nup85 TPR_4 TPR_12 Ribosomal_S19e TPR_16
Other DBs
NCBI-GeneID: 287830
NCBI-ProteinID: NP_001020572
RGD: 1311942
Ensembl: ENSRNOG00000003673
UniProt: Q4QQS8
Position
10:101305241..101323980
AA seq 656 aa
MEELDCEPAVTWIPGVNSKKKQMCFDWGPGEMLLCETSFNKTDKSEKVPSCPFIYIIRKD
VDVYSQILRKLFNESHGIFVGLQRLEEELSGKSRKAQLVRVSKNYRSVIRACMEEMHQVA
IAAKDPASGRQFSSQVSILSAMELIWNLCEILFIEVAPAGPLLLHLLDWVRLHVCEVDSL
SADVLGSDHPSKHESFWNLVTVLVLQGRLDEARQMLSKEADASPSSAGMCRVLGDLMRTM
PILSPGNTQTLTELELKWQHWREECERHLQDNTFAANPHLESLCKIMLGDEATLLEQKEL
MSNWYHFLVTRLLYSNPTVKPTDLHLYAQSSLDMFLGGESSPEPLDNILMAAFEFDIHQV
IKECSIALSNWWFVAHLTDLLDHCRLLQSHNLYFGSNMREFLLLEYASGLFAHHSLWQLG
VDYFDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVGSICKILAMKAVRN
NRLGSALSWSIRAKDAAFATLVSDRFLRDYCERGCFSDLDLIDNLGPAMMLSDRLTFLGK
YREFHRLYGEKRFGDAASLLLSLMTSQIAPRSFWMTLLTDALPLLEQKQVIFSAEQTYEL
MRCLEDLASRRPECGEPDAQRLQDDDIETTKVEMLRLALARNLARAIIREGSLEGS
NT seq 1971 nt   +upstreamnt  +downstreamnt
atggaggagctcgactgcgagcccgcagtaacttggattccaggtgtgaattccaagaag
aagcaaatgtgttttgactggggcccaggggagatgctcctatgtgaaacttccttcaac
aaaacagacaaatcagagaaggtcccgagctgcccctttatttatatcataaggaaagat
gtcgatgtttactctcaaattttgagaaaactcttcaacgaatcccatggaatcttcgtt
ggcctgcaaagacttgaggaagaactgtccgggaaatccaggaaagctcaattggttcga
gtgagtaaaaattaccggtcagttatacgtgcctgtatggaagaaatgcaccaggttgca
attgctgctaaagacccagccagtggccggcagttcagcagtcaggtctccattttgtca
gccatggagcttatttggaacctgtgcgagattcttttcattgaagtagctccagctgga
cctctcctcctccatcttcttgactgggtccgactgcacgtgtgcgaggtggacagtttg
tcagcagatgtcctgggcagtgaccacccaagcaagcatgagagcttctggaacttggtg
accgtcttggtgcttcagggccggctggatgaggcccgacaaatgctgtccaaagaagct
gatgccagcccctcttctgcaggcatgtgccgcgtccttggggatctgatgaggacaatg
cccattctcagtcctggcaacactcagacgctgacagagttggagctgaagtggcagcac
tggcgtgaggagtgtgagcgacacttgcaagacaacacatttgcagccaacccccatctg
gagtctctctgcaagatcatgctgggggatgaggccaccttgttggagcagaaggagctt
atgagcaactggtaccatttcttagtgactcggctgctgtattccaaccccacagtgaag
cccactgacctgcacttgtacgcccagtccagcctggacatgtttcttggaggtgagagc
agtccagaaccactggacaacatcttgatggctgcctttgaattcgacattcaccaagtg
atcaaggagtgcagcattgccctgagcaactggtggttcgtagctcacctcacagacctt
ttggatcactgcagactcctccagtcacacaatctctattttggttctaacatgagagaa
ttcctccttctggaatatgcctcaggactgtttgctcatcacagcctgtggcagctgggg
gtggattactttgactactgcccggagctgggccgagtttccttggagctgcacattgag
cggattcctctcaacacagagcagaaagctttgaaggtgctgaggatttgtgagcagcgg
cagatgactgaacaagttggaagcatctgtaagatcttggccatgaaggctgttcgtaat
aatcgcttgggctcagccctctcctggagcatccgcgccaaagatgctgccttcgccaca
ctcgtgtccgacagattcctccgggattactgtgaaagaggctgcttttctgacttggat
ctcattgacaatctggggccagccatgatgctcagtgaccgactgacatttctgggaaag
taccgggagttccacagactgtacggggagaagcgctttggtgatgctgcttctcttctg
ctgtccctcatgacctctcagattgcaccccgttctttctggatgactctgctcacagat
gcccttcctcttttggaacagaagcaggtgattttttcagcagagcagacctacgagctg
atgcgatgcctggaagacttggcctccagaaggccagagtgtggtgagcccgacgcccag
cgactgcaggatgacgacatagagaccaccaaggtggagatgctgagactagctcttgcc
cggaatcttgctcgggcaattataagggaaggctcactggagggttcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (25)   

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