KEGG   Rattus norvegicus (rat): 287930
Entry
287930            CDS       T01003                                 
Symbol
Top3b
Name
(RefSeq) DNA topoisomerase 3-beta-1
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03440  Homologous recombination
rno03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    287930 (Top3b)
   03460 Fanconi anemia pathway
    287930 (Top3b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rno03032]
    287930 (Top3b)
   03400 DNA repair and recombination proteins [BR:rno03400]
    287930 (Top3b)
Enzymes [BR:rno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     287930 (Top3b)
DNA replication proteins [BR:rno03032]
 Eukaryotic type
  DNA Topoisomerases
   287930 (Top3b)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     287930 (Top3b)
   FA (Fanconi anemia) pathway
     287930 (Top3b)
SSDB
Motif
Pfam: Topoisom_bac Toprim HepT-like
Other DBs
NCBI-GeneID: 287930
NCBI-ProteinID: NP_001099331
RGD: 1309468
Ensembl: ENSRNOG00000001845
UniProt: D4A9Z2 A6JSP3
Position
11:complement(97601223..97629678)
AA seq 862 aa
MKTVLMVAEKPSLAQSIAKILSRGNMSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGH
VMTLDFLGKYNKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDK
EGENICFEVLDAVLPVLNNAHNGEKTVFRARFSSITDTDICNAMTRLTEPDHNEALSVDA
RQELDLRIGCAFTRFQTKYFQGKYGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY
WVLQAKVHTDKEESLLLDWDRVRVFDREIAQMFLNMTKLEKEAWVEATSKKEKAKQRPLA
LNTVEMLRVASSALGMGPQHAMQVAERLYTQGYISYPRTETTHYPENFDLKGSLRQQANH
PYWADSVKQLLAEGINRPRKGHDAGDHPPITPMKSATEAELGGDAWRLYEYITRHFIATV
SHDCKYLQSTISFRIGPEHFTCMGKTVISPGFTEIMPWQSVPLEESLPTCQKGDTFTVGE
VKMLEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVENGRRLKPTNL
GIVLVHGYHKIDAELVLPTIRSAVEKQLNLIAQGKANYHQVLGHTLDIFKRKFHYFVDSI
AGMDELMEVSFSPLAATGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYTLPQNGTIKL
YKELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDMKKGMGCNECTHPTCQHSLSM
LGIGQCVECENGVLVLDPTSGPKWKVACNTCSVVAHCFDNAHRVRVSADTCNTCEAALLD
VDFNKAKSPLPGNETQHTGCIFCDTVFQELVELKHAASCHPMHRGGPGRRQGRGRARGRR
PPGKPNPRRPKDKMSALAAYFV
NT seq 2589 nt   +upstreamnt  +downstreamnt
atgaagacggtgctcatggtagcagaaaagccatccctggcacaatccattgccaaaatc
ctctcccgaggaaacatgtcctcacacaaagggctaaatggggcgtgttcagtgcacaaa
tacacaggaacctttgctggccagcccgtccacttcaagatgacatctgtctgtggtcat
gtgatgacactggattttctgggaaagtacaacaagtgggataaggtagatcctgcagag
ttattcagccaagctccaacagagaaaaaggaagcaaaccccaagctgaacatggtcaag
ttcctgcaggtggagggcagaggctgtgactacgtcgtgctgtggctggactgtgacaag
gaaggcgagaatatttgctttgaggtccttgatgccgttctgcctgtcctgaataatgcc
cacaatggtgagaagacagtgttccgggccaggttcagttccatcacagacacggacatc
tgcaatgccatgacccgcctgactgagccagaccacaatgaggcactctcggtggatgcc
cgccaggagctagacctgcgcatcggctgtgcgttcactaggtttcaaacaaagtatttc
cagggaaaatatggcgacttagacagctctctcatctcctttgggccttgtcagactcca
accctgggattctgtgtagaaagacatgataaaatccagtccttcaaaccagagacctac
tgggtacttcaggccaaggttcatactgataaagaggagtcactccttttggactgggac
cgagttagagttttcgaccgggagattgcacagatgtttttaaacatgacaaagctagaa
aaagaagcttgggtggaggctacaagcaagaaagaaaaagccaagcagagaccacttgct
ctgaacactgtggagatgttgcgtgtggccagttcagctctgggtatgggaccacagcat
gccatgcaagtagctgagagattatacacacagggctacatcagctacccacggacagaa
accacacactatcccgagaactttgacctgaagggctctttacgacaacaggccaatcac
ccatactgggcagactcggtaaagcagttgttagcagaaggcatcaaccgccctcggaaa
ggtcacgatgctggtgaccatcctccgatcacaccaatgaagtcagctacagaggctgaa
ttaggaggtgacgcttggcgactctacgagtacatcaccagacacttcatcgccacagtg
agccatgactgcaagtatctccagagcaccatctccttcaggatcgggcccgagcacttc
acatgcatgggaaagacagttatttccccaggcttcacagagatcatgccttggcagagc
gtgcccctggaagagagtctgcccacatgccagaagggcgataccttcactgtgggtgag
gtgaagatgctagagaagcagacgagccccccggactatctgactgaggctgagctcatc
accctcatggagaagcatggcatcgggacggatgccagtatccctgtgcacatcaacaac
atctgccagcgcaactacgtcacagtggagaacggccgccggctcaagcccaccaacctc
ggcatagttctggtgcacggctaccacaagattgatgcagagctggtgctccccaccatc
cgcagcgcagtggagaagcagctgaaccttattgcccagggcaaagccaactaccaccag
gtgctgggccacaccctggatatcttcaagagaaagttccactactttgttgattctatt
gctggcatggacgagttaatggaggtatccttttcacccctggctgccactggcaagccc
ctctcgcgctgtgggaagtgccatcgatttatgaagtatatccaggccaagccaagccgc
ctgcactgctcccactgcgatgagacctacaccctcccccagaatggtaccatcaagctc
tacaaggagctgcggtgcccattggatgactttgaactggtcttgtggtcctcaggctcc
cggggcaagagctaccccctctgtccctactgctataaccacccacccttccgagacatg
aagaaaggcatgggctgcaatgagtgcacacaccctacgtgccagcactcactgagtatg
ctgggcattggccagtgcgtggagtgcgagaatggagtcctggttctggaccccacctcc
ggtcccaagtggaaggtggcctgcaatacatgcagcgtagtggcacactgctttgacaat
gcccaccgagtacgggtgtctgctgacacctgcaacacctgcgaggctgccttgctcgat
gtagacttcaacaaggccaagtctccccttcctggcaacgagacacagcacacaggctgc
atcttctgtgacaccgtcttccaggagctggtggagctgaagcatgcagcctcctgccac
cccatgcaccgaggtggtcctggaaggaggcagggtcgtgggcgggcccggggccggaga
cctccaggaaagcccaaccccaggcggccaaaagacaagatgtcagccctggctgcttac
tttgtataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (17)   
   UniProt (2)   
   RefSeq(pep) (15)   
DNA sequence (22)   
   RefSeq(nuc) (18)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (56)   

Download RDF
DBGET integrated database retrieval system