KEGG   Rattus norvegicus (rat): 287953
Entry
287953            CDS       T01003                                 
Symbol
Trmt2a
Name
(RefSeq) tRNA (uracil-5-)-methyltransferase homolog A
  KO
K15332  tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rno03016]
    287953 (Trmt2a)
Transfer RNA biogenesis [BR:rno03016]
 Eukaryotic type
  tRNA modification factors
   Methyltransferases
    287953 (Trmt2a)
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 Methyltransf_25 Methyltransf_11 PCMT Methyltransf_4 MTS Ubie_methyltran Cons_hypoth95 PrmA Methyltransf_23 Methyltransf_15 Methyltransf_32 N6_N4_Mtase CMAS Methyltransf_12 MetW RRM_1 TPMT AviRa
Other DBs
NCBI-GeneID: 287953
NCBI-ProteinID: NP_001011895
RGD: 1310418
Ensembl: ENSRNOG00000001885
UniProt: A6JSH8 F7F7M9
Position
11:complement(96241998..96246719)
AA seq 615 aa
MSEKLDTEVPEHMEDCGQDVSAVGSSAASVCQDEKEDPGPAAGPGTQPGLYSYIRDDLFT
SEIFKLELQNVPRHASFSDVRRFLGRFGLQSHKIKLFGQPPCAFVTFRSAAERDKALRVL
HGVLWKGRPLSVRLARPKADPMARKRRQEGDNEPTATQIADVVTPLWTVPYTEQLEQKRL
ECERVLQKLAKEIGNTNHALLPWLLLQRQQHNKACCPLEGVKPSPQQTEYRNKCEFLVGV
GVDGEDNTVGCRLGKYKGGTCAVAPPFDTVHIPQATKQLVKAFQEFIRSTPYSAYDPETY
TGHWKQLTVRTSRRGQAMAIAHFHPQKLSSEEVAGLKASLVCHFMEGPGKASGVTSLYFV
EEGQRKTPSQEGLPLEHMAGDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQEWAQ
LDGGSTVLDVCCGTGTIGLALAPKVKKVIGIELCQEAVEDARMNALTNELSNVEFHCGRA
EDLVPGLVSKLSSQQLVAVLDPPRAGLHSKVILAMRKAENIKRLLYVSCNPRAAMGNFVD
LCRAPSNRVKGTPFHPVKAVAVDLFPQTPHCEMLILFERMQQHPNGIGALEHQDLQTPRN
LPDLTAQETETSLSP
NT seq 1848 nt   +upstreamnt  +downstreamnt
atgagtgagaagctggacacggaagttccggagcacatggaggactgcggccaggatgtc
agtgcagtgggcagctctgcagcctcagtatgtcaagatgagaaagaggaccctgggcca
gctgcagggcctggaactcagcctgggctctacagctacataagggatgacttgttcacc
tcagagatctttaaactggagctccaaaatgtacctcgccacgccagcttcagtgacgtc
cggcgttttttaggccgttttggcttacaatcccacaaaatcaaactctttggacagcca
ccatgtgcctttgtgacatttcgcagtgctgctgaacgagacaaggccttgcgagtgctg
catggtgttctctggaagggtcgtccactcagtgtacgactggcccgacccaaggctgac
cccatggctaggaagaggcggcaagaaggcgataatgaaccaacagcaacacagattgcc
gatgtggtgacccctctttggacagtgccctacactgagcagctggagcagaagcgactg
gaatgtgagcgggtgctacagaaactggccaaggaaattgggaacactaaccatgccctg
ctaccctggctgctcttgcagagacaacagcacaataaagcttgttgcccattggagggg
gtcaagccatcaccccagcagactgagtaccgtaacaagtgtgaatttctggtcggagtt
ggggtagatggagaggacaacactgttggctgccggcttggcaagtacaagggcgggacg
tgtgctgtggcgcctccctttgacactgtgcacattccacaggccactaagcagctggtg
aaggccttccaggagttcatccgttccacaccatattcggcatatgaccctgagacatac
acaggccactggaagcaactgactgtccgcaccagccgccgaggtcaagccatggccatt
gcccacttccatccccagaaactgagctctgaggaggtggcaggactaaaggcctccctg
gtgtgccacttcatggaggggccaggcaaggccagtggggtgacatccctctactttgtg
gaggagggacagagaaagactcccagccaggaaggcctgcccctggagcatatggccggt
gaccagtgcattcaggaagacctgctagggctcactttccgcatctcccctcatgcattc
ttccaggtaaacacacctgcagccgaggtgctctacacagtcatccaggaatgggcccag
ctggatgggggcagcacagtgttggacgtttgctgtggcactggtaccatagggctagcc
ctggctccgaaggtgaagaaagtaattgggattgaactgtgccaggaggctgtggaggat
gcccgtatgaacgccctcaccaatgagctgagcaacgttgagttccactgcggcagggct
gaggatctggtgccaggcttggtgagcaaactgtcttcccagcaacttgtagctgttcta
gacccaccacgggctggcctacattctaaggtgattctggccatgaggaaagctgagaac
atcaagcggctcctgtatgtttcctgcaaccccagggcagccatgggcaactttgtggat
ctctgcagagccccatctaaccgagtgaaaggtaccccattccatccagtcaaggctgtg
gcagtggacctgttcccacagaccccacactgtgaaatgcttatcctgtttgagaggatg
caacaacaccctaatggcataggggccctggaacatcaagaccttcaaaccccaagaaat
cttcccgacctcactgcacaggaaacagagacttccctctcaccctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (7)   
   RefSeq(nuc) (5)   
   GenBank (1)   
   EMBL (1)   
Protein domain (20)   
   Pfam (20)   
All databases (40)   

Download RDF
DBGET integrated database retrieval system