KEGG   Rattus norvegicus (rat): 288003
Entry
288003            CDS       T01003                                 
Symbol
Rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03030  DNA replication
rno03410  Base excision repair
rno03420  Nucleotide excision repair
rno03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    288003 (Rfc4)
   03410 Base excision repair
    288003 (Rfc4)
   03420 Nucleotide excision repair
    288003 (Rfc4)
   03430 Mismatch repair
    288003 (Rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rno03032]
    288003 (Rfc4)
   03036 Chromosome and associated proteins [BR:rno03036]
    288003 (Rfc4)
   03400 DNA repair and recombination proteins [BR:rno03400]
    288003 (Rfc4)
DNA replication proteins [BR:rno03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    288003 (Rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    288003 (Rfc4)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    288003 (Rfc4)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     288003 (Rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    288003 (Rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_assoc_2 DUF815 AAA_16 AAA_30 AAA_22 AAA_11 AAA_24 DNA_pol3_delta Mg_chelatase RuvB_N AAA_28 SLFN-g3_helicase AAA_5 AAA_19 ResIII AAA_23 HrcA_DNA-bdg bpMoxR AAA_7 Gp44_lid
Other DBs
NCBI-GeneID: 288003
NCBI-ProteinID: NP_001099339
RGD: 1310142
Ensembl: ENSRNOG00000001816
UniProt: F7FPS8 B4F778
Position
11:91254273..91268727
AA seq 364 aa
MQAFLKGTSVSTKPQLTKERGISSSAGSSGETKKVKPVPWVEKYRPKCVDEVAFQEEVVA
VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR
EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC
NYVSRIIEPLTSRCSKFRFKPLSDKIQQKRLLDIAEKENVKIGDEEIAYLVRISEGDLRK
AITFLQSATRLTGGKEISEDVITDIAGVIPAATIEGIVTACHSGSFDKLEAVLKNLIDEG
HAATQLVNQLHDSIIEDENLSDKQKSIITEKLAEVDKCLADGADEHLQLMSLCATVMQQL
TQNC
NT seq 1095 nt   +upstreamnt  +downstreamnt
atgcaagcatttctgaaaggcacatctgtcagtaccaaaccacaattgaccaaggaacgg
ggcatatcttcctctgcaggaagcagtggagaaaccaagaaagtcaaaccagttccttgg
gtggaaaaataccgtccgaagtgcgtggatgaagttgctttccaggaagaagtggttgca
gtgctgaaaaagtctttagaaggagctgatcttcctaatctcttgttctatgggccacct
ggaactggcaaaacatccaccattttggcagcagctagagagctctttgggcctgaactc
tttcgattaagagtccttgagttaaatgcatctgatgaacgtggaatacaagtagtccga
gagaaagtgaaaaactttgctcagttaactgtgtctggaagtcgttcagatgggaaacca
tgtcctccctttaagattgtaattctggatgaagcagattctatgacttcagctgctcag
gcagctttaagacgaaccatggaaaaagagtctaaaacaaccagattctgcctcatctgt
aactatgtcagccgaataattgaacccctcacttctagatgttcaaaattccgcttcaag
cctctgtcagataaaattcaacagaagcgattattggatattgctgagaaggaaaatgtc
aaaattggcgatgaggaaatagcttatcttgttagaatatcagaaggagatttacggaaa
gcaattacatttcttcaaagtgctactcgactaacaggtggaaaggaaatctcggaagat
gtgatcacagacattgctggggtaataccagctgcaaccattgagggaatagtcactgca
tgtcacagcggctcttttgacaaactagaagccgtgctgaagaacctaatagatgaaggg
catgcagccactcagcttgtcaaccaacttcatgattcaatcatagaagatgaaaatctg
tctgataaacagaagtccatcattacagaaaaacttgctgaggtggataagtgtttagca
gatggtgcagatgagcacctgcagctgatgagcctctgcgcaactgtgatgcagcaactg
acccagaactgttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (24)   
   Pfam (24)   
All databases (49)   

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