KEGG   Rattus norvegicus (rat): 288151
Entry
288151            CDS       T01003                                 
Symbol
Hoxd1
Name
(RefSeq) homeobox protein Hox-D1
  KO
K09301  homeobox protein HoxA/B/D1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04550  Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04550 Signaling pathways regulating pluripotency of stem cells
    288151 (Hoxd1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    288151 (Hoxd1)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Helix-turn-helix
   Homeo domain ANTP: HOXL
    288151 (Hoxd1)
SSDB
Motif
Pfam: Homeodomain Homeobox_KN
Other DBs
NCBI-GeneID: 288151
NCBI-ProteinID: NP_001099354
RGD: 1309179
Ensembl: ENSRNOG00000001572
UniProt: D4ACE4 A6HME0
Position
3:80073041..80075180
AA seq 328 aa
MSSYLEYVSCAAGGGSGGVGGDVLGFAPKFCRADARPVALQPAFPLGSGDGAFVSCLPLA
AARPTPSPPVAPAQPPGPQPAASRYAPCTLEGAYERGAAPASAAEYGFLGSGPAFDFPGA
LGRAADDSGPHVHYATSAVFSSGGSFLLSGQVDFAAFAEPGPFPACLKEPADGHPGPFQT
VSPAPGACPKPASPTSGLPAAHSTFEWMKVKRNAPKKSKLSEYGATSPSSAIRTNFSTKQ
LTELEKEFHFNKYLTRARRMEIANCLQLNDTQVKIWFQNRRMKQKKREREGLLATAASVA
SLQLPGSETSPIKSGRNLGSPSQAQEPS
NT seq 987 nt   +upstreamnt  +downstreamnt
atgagctcctacctggagtacgtatcgtgcgctgcgggcggaggcagcggaggggtaggc
ggcgacgtgctgggcttcgcacccaagttctgccgcgccgacgcgcgcccagtggccctg
cagcccgccttccccctgggcagcggcgacggcgccttcgtgagctgcctgcccctggcc
gctgcccggcccacgccttcacctcccgtagcccccgcgcagcccccgggcccgcagccg
gccgcgtcccggtacgcgccctgtaccctggaaggcgcctacgaacggggcgccgcacct
gcctctgccgccgagtatggtttcttggggtccgggccggcattcgactttccgggcgcg
cttgggagagcagcggacgacagcggcccgcacgtccactatgccacctcggcggtcttt
tccagcggaggatcattcctgctcagcggccaggtggacttcgctgcctttgccgagcct
ggcccctttcccgcttgtctcaaggaacccgcagacggccaccccgggccctttcagact
gtgtccccggcccccggagcctgccccaagcccgcctcgcccacctccggcctcccggcc
gcccacagcactttcgagtggatgaaagtgaagaggaacgcccccaagaaaagcaaactg
tccgaatatggagccacaagcccctccagtgccatccgcacgaatttcagcaccaagcaa
ctgacagaactcgagaaagagtttcatttcaataagtacctaactagagcccgacgcatg
gagatagccaactgtttacagctgaatgacacccaggtcaaaatctggttccagaaccgg
aggatgaaacagaagaaaagggaacgagaggggcttctggccacagctgcctctgtggcc
tcgcttcaacttcccgggtcagaaacaagtcccatcaaatctggccggaatctaggaagc
ccttctcaggctcaagagccttcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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