KEGG   Rattus norvegicus (rat): 288378
Entry
288378            CDS       T01003                                 
Symbol
Clec4m
Name
(RefSeq) CD209b antigen
  KO
K06563  C-type lectin domain family 4 member L/M
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03260  Virion - Human immunodeficiency virus
rno03264  Virion - Flavivirus
rno04145  Phagosome
rno04625  C-type lectin receptor signaling pathway
rno05152  Tuberculosis
rno05162  Measles
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03260 Virion - Human immunodeficiency virus
    288378 (Clec4m)
   03264 Virion - Flavivirus
    288378 (Clec4m)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    288378 (Clec4m)
 09150 Organismal Systems
  09151 Immune system
   04625 C-type lectin receptor signaling pathway
    288378 (Clec4m)
 09160 Human Diseases
  09172 Infectious disease: viral
   05162 Measles
    288378 (Clec4m)
  09171 Infectious disease: bacterial
   05152 Tuberculosis
    288378 (Clec4m)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rno04131]
    288378 (Clec4m)
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:rno04054]
    288378 (Clec4m)
   04090 CD molecules [BR:rno04090]
    288378 (Clec4m)
   04091 Lectins [BR:rno04091]
    288378 (Clec4m)
Membrane trafficking [BR:rno04131]
 Endocytosis
  Phagocytosis
   C-lectin receptors
    288378 (Clec4m)
Pattern recognition receptors [BR:rno04054]
 Membrane-bound pattern recognition receptors
  C-type lectin receptors
   288378 (Clec4m)
CD molecules [BR:rno04090]
 Proteins
  288378 (Clec4m)
Lectins [BR:rno04091]
 C-Type lectins
  Group 2: Type II membrane receptors (Asialoglycprotien and DC receptors)
   DC-SIGN subgroup
    288378 (Clec4m)
SSDB
Motif
Pfam: Lectin_C GlnE IIGP FUT8_N_cat HERV-K_REC DUF2408
Other DBs
NCBI-GeneID: 288378
NCBI-ProteinID: NP_001163868
RGD: 1561466
Ensembl: ENSRNOG00000029881
UniProt: Q5BK08
Position
12:complement(6713795..6722414)
AA seq 319 aa
MQPLDSMEDGEMEVSGSRYSIKSSRLRPNSGIKSLAGCLGHNQAPLVLQLLSFLFLAGLL
LIILFQVFKTTNTQWQEEPKQEKILEELNQLTDELMSRIPISQGQNESMQEKISEQLTQL
KVELLSRIPVFQVQNESMQEKISEQLTQLKAELLSKIPSLQVQDESKQEKIYQQLVQMKT
ELLRLCRLCPWDWTFLLGNCYFLSKSQRNWNDAVRACKEEKAQLVIINSDEEQTFLQLTS
KAKGPTWMGLSDLKNEATWLWVDGSTLSSRFQKYWNRGEPNNIGEEDCVEFAGDGWNDSK
CELKKFWIFKKSATACTEG
NT seq 960 nt   +upstreamnt  +downstreamnt
atgcagcctcttgattccatggaggacggcgagatggaggtcagtggcagcaggtattct
attaaaagctccagactacgaccaaattctggaatcaagagtttggcaggatgcctggga
cacaaccaagcccccttggtcctgcagctgctctctttcctgttcttggctgggctcctg
ctgatcattcttttccaagtcttcaagaccacaaatacccagtggcaggaggaacccaag
caagagaagatccttgaggaactgaaccagctgacagacgaacttatgtccaggatcccc
atctcccaggggcagaatgagtccatgcaggagaagatctctgagcaactgactcagctg
aaggttgaactcctatccaggatccccgtcttccaagtgcagaatgaatccatgcaagag
aagatctctgagcaactgacacagctgaaggctgaactcctttccaagatccccagcctc
caggtacaggatgagtctaagcaggagaagatctaccaacagctggtacagatgaagact
gaactcctccgcctgtgtcgactctgcccctgggactggacattcctcctaggaaactgt
tacttcttatccaagtcccaacggaactggaatgatgccgtcagagcttgcaaagaagag
aaggctcaattagtcatcatcaatagtgatgaagagcagaccttcctacagctgacttct
aaggctaaaggaccaacctggatggggctgtcagacctgaagaatgaagccacatggctc
tgggtagatggttctactctgtcatccagattccagaaatattggaatagaggggagccc
aacaacatcggtgaagaagactgtgtagaatttgctggggatggctggaatgactccaaa
tgtgaactcaaaaagttctggattttcaagaagtctgcgaccgcatgcactgaaggctag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (6)   
   KEGG PATHWAY (6)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (33)   

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