KEGG   Rattus norvegicus (rat): 288414
Entry
288414            CDS       T01003                                 
Symbol
Rfc3
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03030  DNA replication
rno03410  Base excision repair
rno03420  Nucleotide excision repair
rno03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    288414 (Rfc3)
   03410 Base excision repair
    288414 (Rfc3)
   03420 Nucleotide excision repair
    288414 (Rfc3)
   03430 Mismatch repair
    288414 (Rfc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rno03032]
    288414 (Rfc3)
   03036 Chromosome and associated proteins [BR:rno03036]
    288414 (Rfc3)
   03400 DNA repair and recombination proteins [BR:rno03400]
    288414 (Rfc3)
DNA replication proteins [BR:rno03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    288414 (Rfc3)
  DNA Replication Termination Factors
   ELG1-RFC complex
    288414 (Rfc3)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    288414 (Rfc3)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     288414 (Rfc3)
  Check point factors
   HRAD17(Rad24)-RFC complex
    288414 (Rfc3)
SSDB
Motif
Pfam: DNA_pol3_delta2 Rad17 AAA AAA_22 AAA_16 ABC_tran AAA_2 Sigma54_activ_2 DNA_pol3_delta AAA_11 MyTH4 AAA_19 ATPgrasp_ST zf-HC2 DUF2247
Other DBs
NCBI-GeneID: 288414
NCBI-ProteinID: NP_001009629
RGD: 1306832
Ensembl: ENSRNOG00000001088
UniProt: F7F7G0 Q5M830
Position
12:5836546..5847331
AA seq 356 aa
MSLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
LETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
AIRVPAPSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEACRVQQYPF
TEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEVIMKGLLSELL
HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMVF
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgagcctctgggtggacaaataccggccgagctcccttgcacggctggactatcacaag
gagcaggcagcacagctgcgcaacctggtgcagtgtggagactttcctcacctcttagta
tatggaccatcgggtgctggaaaaaagacaagaattatgtgtattctacgtgaactttat
ggtgttggggtggaaaaactgagaattgagcatcagactatcacaactccatctaagaaa
aaaattgagatcagcaccattgcaagtaactaccaccttgaggttaaccccagcgatgca
ggaaacagcgaccgggtcgtaatccaggagatgctgaagacagtggcccagtcacaacag
cttgaaaccagctcacaaagagacttcaaagtggtgttactgacagaggtggacaagctc
acgaaggacgcccagcacgccttgcgcaggaccatggagaagtacatgtctacctgcagg
ctgatcctgtgctgcaattccacgtccaaagtgataccccccatccgaagcaggtgcctg
gccatccgtgtgcctgcccccagcatcgaagatatttgcagtgtactgtccaccgtctgc
aagaaggaaggtctggcccttccttcaaagttggctcgcaggctggccgagaagtcgtgc
aggaacctcaggaaggccttacttatgtgcgaagcctgccgagtgcagcaataccctttc
accgaagaccaagaaatccctgagacagactgggaggtgtacctgagggagactgcaaat
gccattgtcagtcagcagacgccacagaggctcctcgaagtccgaggaaggctctatgag
cttctgacgcactgtattcctcctgaggtaatcatgaagggcctgctctcagaactcctg
cataactgtgacgggcagctgaaaggggaagtggcacagatggcggcctattatgagcat
cgcctgcagctgggcagcaaagcgatctatcatctggaagcatttgtggcgaagtttatg
gcactttataagaagttcatggaggacgggctggaaggcatggtgttctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (8)   
   RefSeq(nuc) (2)   
   GenBank (3)   
   EMBL (3)   
Protein domain (15)   
   Pfam (15)   
All databases (42)   

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