KEGG   Rattus norvegicus (rat): 288482
Entry
288482            CDS       T01003                                 
Symbol
Usp42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42
  KO
K11855  ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:rno01002]
    288482 (Usp42)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    288482 (Usp42)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     288482 (Usp42)
Peptidases and inhibitors [BR:rno01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   288482 (Usp42)
Ubiquitin system [BR:rno04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    288482 (Usp42)
SSDB
Motif
Pfam: UCH UCH_1
Other DBs
NCBI-GeneID: 288482
NCBI-ProteinID: NP_001099379
RGD: 1305231
Ensembl: ENSRNOG00000001059
Vega: OTTRNOG00000001906
UniProt: D3ZU96
Position
12:15903110..15954429
AA seq 1325 aa
MTIVDKTEPSDPSTCQNQPGSSEAVSPEDMDTGSASWGAVSSISDVSNHTLSLGPVPGAV
VYNNSSVPEKSKPSPPKDQVLGDGIAPPQKVLFPSEKICLKWQQSHRVGAGLQNLGNTCF
ANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQTHITQALSNPGDVIKPMFVIN
EMRRIARHFRFGNQEDAHEFLQYTVDAMQKACLNGSNKLDRHTQATTLVCQIFGGYLRSR
VKCLNCKGVSDTFDPYLDITLEIKAAQSVTKALEQFVKPEQLDGENSYKCSKCKKMVPAS
KRFTIHRSSNVLTISLKRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIIYVLYAVLV
HTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRSVLNQQAYVLFYIRSHDVKNGGET
THPAHSPGQSSPRPGISQRVVNSKQAAPGFIGPQLPPHVMKNTPHLNGTTPVKDTPSSSV
SSPNGNTSVNRASPATASTSVQNWSVNRPSVIPEHPKKQKITISIHNKLPVRQGQAQLNN
NLHGPCLEAPSKAAPSSTITNPSAIQSTSNAPTTSVSPSESCPKPMVNGKAKVGSSVLVP
YGAESSEESDEESKGLAKENGVDMMTSTQSSRPETADEDGEASPHELQESVMLNGANSAD
SDSRESSLAFDSASCQVQPDLHTENLFNKLNGLPGKVTPAPLQSVPEDKILETFKLTNQA
KGPAVEESWTTTGGSSPRASVSQPEPITDETSPLEIPEAVTNGSMKTPSTTSPLEPTISC
TKEDSSVVVVSAEPMEVLPSVPALCNSTGTTLGDAPVPESCDPGDLTANPSQPSQAVKGD
PAENSENSTLAEVVERLSPAPSVLTGDGCEQKLFLYLSTEGSEEAEDSSRSSAVSADTVP
PQPDRTTSSCAGAAEQAAGDRGDGGSVGPKAQEPSPAKEKMNSLRKVDRGHYRSRRDRSS
SGEHVRDSRARPEDHHHKKRRCYSRERPKQERHPANTYCNGGQHLGHGDRASPERRSLSR
YSHHHSRVRSGLEQDWSRYHHSENEPAWARERFYPDKMRWDKCRYYHDRYTTTLYTAREA
AREWRPLHGREHERLVQSGRPHKDSYWGRKGWDLQSRGKERPHFHSPREAPGLAVPLERH
LQEKAALSVQDSSHSLPERFHEHESVKLRKRRYETLDNNDDHPEKKVHKSLEKDALEEPR
AKKHKKSKKKKKSKDKHRARDSRHQQESDFSGAYSDADLHRHRKKKKKKKRHSRKSEDFI
KDVEMHLPKLSSYEAVGHFRRTEGTFLLADGLPVEDSGPFREKTKHLRMESRPDRCHLSE
YGQGN
NT seq 3978 nt   +upstreamnt  +downstreamnt
atgaccatagttgacaaaactgaaccttcagacccatcaacctgtcagaaccagcctggc
agttctgaggcggtctcacctgaagacatggacacaggctctgccagctggggtgccgtg
tcttccataagtgatgtctcaaatcatacactttcattggggccggtgcctggtgctgta
gtttacaataactcgtctgtacctgagaaatcaaaaccatcaccaccaaaggatcaagtc
ctaggtgatggcattgctcctcctcaaaaggtcctatttccatctgaaaagatttgtctt
aagtggcaacaaagtcatcgagttggcgctgggctgcagaatttgggcaatacctgtttt
gccaatgctgcgttgcaatgtctgacttacacaccacccctcgccaactacatgctatcc
catgaacactccaagacatgccatgcagaaggattctgtatgatgtgcacaatgcagacg
cacattacccaggcacttagcaaccctggggatgttatcaagcccatgttcgtcatcaat
gaaatgcggcgtatagctagacatttccgttttggtaaccaagaagatgcccatgaattt
cttcagtacacggtcgatgccatgcagaaagcatgtttaaatggcagcaataaattagac
agacatacccaggccaccaccctggtctgccagatatttggaggctacctaagatcccga
gtcaagtgtttaaattgcaagggtgtttcagacacctttgatccatacctggacataaca
ctggagattaaggctgcacagagcgttaccaaggcgctggaacagttcgtgaagccagaa
caactggatggagaaaactcctacaaatgtagcaagtgcaaaaagatggttccagcttca
aagagattcaccatccataggtcctctaatgttcttaccatttcactgaaacggtttgcc
aactttaccggtggaaaaattgctaaggacgtgaaatatcccgagtaccttgatatccgg
ccctatatgtctcagcccaacggagagcccatcatttatgttttgtatgctgtgctggtg
cacaccggttttaactgtcatgctggccactacttttgctacatcaaggctagcaatggc
ctctggtatcagatgaatgactctatcgtgtccaccagtgatattagatcggtgcttaac
cagcaggcttacgtgctcttttatatcaggtcccatgatgtgaaaaatggaggggagacc
actcatcctgcccatagccctggccagtcctccccccggccagggatcagtcagcgtgta
gtcaacagcaagcaggcggcgccaggattcatcgggccgcagctgcctccccatgtgatg
aagaacacaccacacttgaatggcaccacgccggtgaaagacacaccaagcagttctgtt
tcaagccctaacggaaacaccagcgtcaatagggccagtcctgctacggcttcgacgtct
gtgcagaactggtctgttaacaggccctcagttattccggaacaccctaagaaacaaaaa
attactatcagtattcacaacaagttgcctgttcgtcaaggtcaggcacagctgaataac
aacctccatggcccttgtctggaggcccctagcaaggcggccccctcctccaccatcact
aacccttctgcaatacagtctacctcgaatgcacccacgacatcagtttccccaagtgag
tcctgtcccaagcccatggtgaatggcaaggctaaagtgggctccagtgtgctcgtcccc
tatggggctgagtcctcagaggagtctgatgaggagtccaagggcctggccaaggagaac
ggtgtggacatgatgaccagcactcagtccagtagaccagaaaccgcagatgaggacggt
gaggcttcccctcatgagcttcaagagtccgtcatgctaaatggtgctaatagcgcagac
agtgactcgagagagagcagcctggcatttgacagtgccagctgccaggtccagcccgat
ctacacacagaaaacctctttaacaaactcaatggtcttcctggaaaggtgacgcccgct
ccattgcagtctgttcctgaagacaaaatccttgagactttcaagcttaccaaccaggca
aaaggtccagcggttgaagagagttggactacaacagggggaagctctccaagggcctct
gtttcacagccggagcccatcaccgatgagaccagtccccttgagataccggaggcagtc
accaacgggagcatgaagaccccttccaccacgtcacctctggagcccaccatcagctgt
accaaagaagactcttccgtcgtcgtcgtctcagcagaacctatggaggttttgccttcc
gtccctgctctctgtaacagcaccggtactaccttgggggatgccccagtgcccgaatcg
tgtgaccctggagacttgactgccaacccgagccaaccatcgcaagcggtgaagggtgat
ccagctgagaactctgagaactccaccttggctgaagtggtggagaggctgagccctgct
ccctctgtgctcacaggggacgggtgtgagcagaaactcttcctttacctcagtacagag
gggtccgaggaggcagaagactcctccaggagctcggcagtctctgctgacacggtgccc
cctcagcctgacaggaccaccagctcctgtgcaggggctgccgagcaggctgccggggat
agaggcgatggaggcagtgtgggacccaaagctcaggagccctccccggccaaggaaaag
atgaacagccttcggaaagtggatcgaggacactatcggagccggagagaccggtcctcc
agtggggagcacgtgagggacagcagggcccgaccagaggaccatcaccataagaagcgg
cgctgctacagccgagagcggcccaagcaggagcgccaccctgctaacacatactgcaat
gggggccagcacctgggccacggcgacagagccagccccgagcgccgctccctgagcagg
tacagccaccatcactcacgggttaggagtggcctggagcaggactggagccggtaccac
cactcggaaaatgagcctgcctgggccagggagaggttctacccggacaagatgcgctgg
gacaagtgtaggtattaccacgacaggtacactacgaccctgtacacggcccgggaggca
gcccgcgagtggcggcctctacatggtcgtgagcatgaacgccttgtccagtctggacgg
ccacacaaggacagctactggggccgcaagggctgggacctacaatcccgggggaaggaa
cggccccacttccatagcccacgagaggcccctggccttgctgtacccctcgagaggcat
ctccaagagaaggctgcgctgagtgtgcaggacagcagccacagtctccctgagcgcttt
catgaacacgaaagtgtcaagttgaggaaaaggaggtatgagactctagacaataatgac
gaccatccagaaaagaaagtccacaaaagcctggagaaggacgcgctagaagagccaagg
gcaaagaagcacaaaaaatctaaaaagaaaaagaagtccaaagataaacaccgggctcgg
gatagcaggcaccagcaagaatccgacttttcaggagcatactctgatgctgacctccat
agacaccggaagaaaaagaagaaaaagaaaaggcattcaaggaagtcggaggactttata
aaagatgttgagatgcatttaccgaagctctcgagctatgaggccgttggccatttccgg
agaacagagggcacctttctactggctgatggtctgcctgtggaagacagcggccctttc
cgggagaaaacgaagcatttaaggatggaaagccggcctgacagatgtcatctgtcagag
tatggccagggtaactaa

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