KEGG   Rattus norvegicus (rat): 288533
Entry
288533            CDS       T01003                                 
Symbol
Taf6
Name
(RefSeq) transcription initiation factor TFIID subunit 6
  KO
K03131  transcription initiation factor TFIID subunit 6
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    288533 (Taf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    288533 (Taf6)
   03036 Chromosome and associated proteins [BR:rno03036]
    288533 (Taf6)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     288533 (Taf6)
   Coactivators
    SAGA/TFTC/STAGA complex
     288533 (Taf6)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     288533 (Taf6)
    STAGA complex
     288533 (Taf6)
    TFTC complex
     288533 (Taf6)
    SAGA complex
     288533 (Taf6)
    SLIK complex
     288533 (Taf6)
SSDB
Motif
Pfam: TAF6_C TAF TFIID-31kDa Bromo_TP TFIID-18kDa Histone
Other DBs
NCBI-GeneID: 288533
NCBI-ProteinID: NP_001037690
RGD: 1311608
Ensembl: ENSRNOG00000001355
UniProt: Q498R0
Position
12:complement(22169570..22178031)
AA seq 647 aa
MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHM
GKRQKLTTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINT
PLPRVPLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKG
KGQGAAAADGKGKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRA
EALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKY
VHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFT
KSWVDEKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGA
DHVQSLLLKHCAPVLAKLRPPPDNQDAYRGEFGSLGPLLCSHVVKARAQAALQAQQVNRT
TLTITQPRPTLTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPSPPPTKFIV
MSSSSSASSTQQGKAKEALLLILLQSHLHLLHHLHLGAVPSVGGSRKLGTAPLQLQGLQR
LMAPSLLDLALPSLLCDIVTCADLLSSADSYTHKQRVREEEERCFPQ
NT seq 1944 nt   +upstreamnt  +downstreamnt
atggctgaggagaagaaactgaaactcagcaataccgtgttgccctccgagtctatgaag
gtggtggcagaatccatgggcattgctcagattcaggaggagacttgccagctactgaca
gatgaggtcagctaccgcatcaaggagattgcccaggatgctttgaagttcatgcacatg
gggaaacgacagaagctcactaccagtgacattgactatgcattgaaattaaagaatgtg
gagccactatatggcttccatgctcaggagttcatccctttccggtttgcctctggtggg
ggccgggagctgtacttctatgaagagaaggaagtggacctgagtgatatcatcaacacc
cctctgcctcgggtgcctctggatgtctgcctcaaagctcattggctgagcattgaaggc
tgccagccagctataccagagaatccacccccagctcccaaagagcagcagaaggccgag
gccacagaacccctgaagtcagcaaagccaggccaagaagaagatggacccttgaaaggc
aaaggtcaaggggcagctgcagctgatggcaaaggaaaagagaagaaggcacctcccttg
ctggaaggggcccctttccgcctgaagccccgcagcatccatgagctgtccgtggagcag
cagctgtactacaaggagatcacagaagcctgtgtgggatcctgtgaggccaagagagcg
gaagctctgcagagcattgccacagatcctggactctatcagatgttaccacggtttagt
accttcatctcagagggggtccgtgtgaatgtggttcagaataacctggccttgctcatc
tacttgatgcgaatggttaaggccctgatggacaaccccacactgtatcttgagaaatat
gtgcacgagctgattcctgcagtaatgacctgcattgtgagcagacagctgtgcctgcgg
ccagatgtggacaatcactgggcactccgggattttgctgcccgtctagtggcccagatc
tgtaagcatttcagcacaaccaccaacaacatccaatcccgaatcaccaagacctttacc
aagagctgggtggatgagaagactccatggacaactcgatatggctccattgcaggcctg
gcagagctggggcatgatgtgattaagaccctaattctgccaaggctgcagcaggaaggg
gagcggatccgaagtgtcttggacggacctgttctgagcaacatcgaccgtatcggagca
gaccatgttcagagccttctcctgaaacactgtgccccagtattggcgaagctgcgccct
ccacctgacaatcaggatgcctaccggggagaatttgggtcccttgggccccttctctgc
tcccatgtggtgaaggccagggcccaggccgctcttcaagctcagcaggtcaacaggacc
acactcaccatcacacagcctcggcccacactgaccctctcacaggcccctcagccaggc
cctcgtacccctggcttattgaaggtccctggctctattgccttgcctgtccagacactg
gtgtctgcaagagctgctgcccctcctcagccttctcctcctccaacgaagtttattgta
atgtcctcatcttccagtgcctcatcaacccagcaggggaaggcaaaggaggccctcctt
ctcatccttctccagtcccaccttcatcttcttcaccatctccacttgggggcagtgccc
tctgtggggggaagcaggaaactggggacagcccccctccagctccagggactccaaagg
ctaatggctcccagcctactggacctagctctccccagcctgctctgtgatattgtcaca
tgtgctgacctcctctcttctgcagattcctacacacacaaacaacgtgtgagggaggaa
gaagaaagatgttttccccagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (8)   
   RefSeq(nuc) (4)   
   GenBank (2)   
   EMBL (2)   
Protein domain (6)   
   Pfam (6)   
All databases (30)   

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