KEGG   Rattus norvegicus (rat): 288596
Entry
288596            CDS       T01003                                 
Symbol
Trim50
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM50 isoform 1
  KO
K12024  tripartite motif-containing protein 50/73/74
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    288596 (Trim50)
Ubiquitin system [BR:rno04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    288596 (Trim50)
SSDB
Motif
Pfam: SPRY PRY zf-RING_UBOX zf-C3HC4_4 zf-C3HC4 zf-B_box zf-C3HC4_2 zf-C3HC4_3 zf-RING_2 zf-RING_5 U-box zf-RING_4 Sina_RING zf-Nse zf-RING_6 Prok-RING_4 Baculo_IE-1 zf-ANAPC11
Other DBs
NCBI-GeneID: 288596
NCBI-ProteinID: NP_851594
RGD: 631346
Ensembl: ENSRNOG00000022483
UniProt: Q810I1 A6J0D3
Position
12:complement(26937349..26954286)
AA seq 483 aa
MAWQLTVPELQDQLQCPICLEVFKEPLMLQCGHSYCKNCLDSLSEHLDSELRCPVCRQSV
DCSSSPPNVSLARVIDALRLPGDTEPTVCVHHRNPLSLFCEKDQEFICGLCGLLGSHQHH
RVTPVSTVYSRMKEELAGRLSELKEQHRDVEEHIGKLVNNRTRIINESDVFSWVIRREFQ
ELHHLVDEEKARCLEGVESHTRGLVASLDMQLEQAQGTQERLAQAERVLEQFGNESHHEF
IRFHSITSRGEVQQARPLEGVFSPISFKPALHQADIKLTVWKRLFRKVLPAPESLKLDPA
TAHPLLELSKGNTVVHCGLLAQRRASQPERFDYSTCVLASKGFSWGRHYWEVVVGSKSDW
RLGVIKGTASRKGKLSKSPEHGVWLIGLKEGRLYEAFGCPRLPLPVAGHPHRIGVYLHYE
QGELTFFDADRPDDLRALYTFQADFQGKLYPILDTCWHERGSNSLPMVLPPPSAPGHLTR
AQV
NT seq 1452 nt   +upstreamnt  +downstreamnt
atggcttggcagctgactgtgccggaactccaggaccagctgcagtgtcccatttgcctg
gaggtcttcaaagagcctctgatgcttcagtgtggccactcctactgcaagaactgcctg
gatagcttgtctgaacacctggattccgagctgcgctgtcctgtgtgtcgtcagtcagtt
gactgcagcagctccccgcctaatgtctccctggcccgggtgatcgatgctctgaggctc
ccgggggacacagagcccaccgtctgcgtgcaccaccgaaaccctctcagcctcttttgt
gagaaagaccaggaattcatctgtggtctctgtggcctgctgggctcccaccaacaccac
agagtcacaccagtctccacggtctacagccgcatgaaggaagagcttgcaggccgcctg
tctgagctgaaggagcagcacagggacgtggaggagcacattggcaaactggtcaacaac
aggacccggattattaatgagtctgacgtcttcagctgggtgatccgaagagagttccag
gagttgcaccacctggtggatgaagagaaagcccgctgcctggagggggtggagagccac
acgcgtggcctggtggcctccctggacatgcagctggagcaggctcagggtactcaagag
cgactggcccaagccgagcgggtgctggagcagtttggcaatgagagtcaccatgagttc
atccggtttcactccataacctccaggggagaggtccagcaggctcggcctttggaaggc
gtcttcagccccatctccttcaagcccgctctccaccaagctgacatcaaactgaccgtg
tggaagaggctattccggaaagttctgccagctccagaatctctcaagctggacccggct
actgcccaccctctcctggagctctcgaagggcaacacagtggtgcactgtggcctcctg
gcccagagacgcgccagccaacctgagcgctttgactacagcacctgtgtcctggctagc
aagggcttctcctggggtcgccactactgggaagtggtggtggggagcaagagtgactgg
cgcttgggggtcatcaagggcaccgccagccgcaaaggcaagctgagcaagtccccagaa
catggggtatggctaataggcctgaaagagggtcggctgtatgaggcttttggctgccca
cggctgccactgcccgtggctggccaccctcatcgcattggcgtctacctacactatgag
cagggtgagctcacgttctttgatgctgaccgtcctgatgatcttcgggcactctacact
ttccaggctgacttccagggcaagctgtaccctatcctggacacatgctggcatgagagg
ggcagcaactcactgcccatggtactgcccccacccagtgcgcctggccacctcacacgt
gcacaggtatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (18)   
   Pfam (18)   
All databases (40)   

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