KEGG   Rattus norvegicus (rat): 288718
Entry
288718            CDS       T01003                                 
Symbol
Tfip11
Name
(RefSeq) tuftelin-interacting protein 11
  KO
K13103  tuftelin-interacting protein 11
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    288718 (Tfip11)
Spliceosome [BR:rno03041]
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    288718 (Tfip11)
  Other components
   Complex C specific factors
    288718 (Tfip11)
SSDB
Motif
Pfam: GCFC TIP_N G-patch G-patch_2
Other DBs
NCBI-GeneID: 288718
NCBI-ProteinID: NP_001008292
RGD: 1311449
Ensembl: ENSRNOG00000000663
UniProt: Q5U2Y6 A6J264
Position
12:complement(49960025..49972257)
AA seq 837 aa
MSLSHLYRDGEGHLDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSD
EERPSFGGKRARDYSAPVNFISAGLKKGAAEEADSEDSDAEEKPVKQEDFPKDLGPKKLK
TGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIE
AKQRKGKGAVGAYGSERTTQSLQDFPVADSEEEAEEEFQKELSQWRKDPSGSKKKPKYSY
KTVEELKAKGRVSKKLTAPQKELSQVKVIDMTGREQKVYYSYSQISHKHSVPDEGVPLLA
QLPPTAGKEAKVPGFALPELEHNLQLLIERTEQEIIQSDRQLQYERDMVVSLSHELEKTA
EVLAHEERVISNLSKVLALVEECEHRMQPHGADPLTLDECARIFETLQDKYYEEYRLADR
ADLAVAIVYPLVKDYFKDWHPLEDSNYGTQIISKWKSLLENDQLLSHSSQDLSSDAFHRL
MWEVWMPFVRNVVAQWQPRNCEPMVDFLDSWAHIIPVWILDNILDQLIFPKLQKEVDNWN
PLTDTVPIHSWIHPWLPLMQARLEPLYSPVRSKLSSALQKWHPSDASAKLILQPWKEVLT
PGSWEAFMLRNIVPKLGMCLGELVINPHQQHMDAFYWVMDWEGMISVSSLVGLLEKHFFP
KWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVG
AYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETK
AEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
NT seq 2514 nt   +upstreamnt  +downstreamnt
atgtctctgtcccacttgtaccgggatggggaaggccaccttgatgatgacgatgacgag
cgtgagaactttgagatcactgactgggatctccagaatgagttcaaccccaaccggcag
cgtcattggcagaccaaagaggaggccacctatggagtgtgggctgagcgtgactcagac
gaggagaggcccagcttcggaggcaaacgggcccgagactattctgcacccgtcaacttc
atcagtgcggggctcaagaaaggggcggctgaggaggctgactcggaggactctgatgcc
gaagagaagcctgtgaaacaggaagactttcccaaggacttaggaccaaagaagttaaaa
acgggtggcaattttaagcccagccagaaaggctttgctggaggaaccaagtcgttcatg
gactttggcagctgggagagacacacgaaagggatcgggcagaagctgctgcagaagatg
ggctacgtccctgggcggggcctggggaagaacgcccagggtatcatcaaccccattgaa
gccaagcagaggaaaggcaagggagctgtgggggcctacggctcggagaggaccactcag
tctctgcaggacttccctgtggccgactccgaagaggaggcagaagaggagtttcagaag
gagctgagccagtggagaaaagaccccagcgggagcaagaagaagccaaagtattcttac
aagactgtggaggagctgaaagccaaaggcagggtcagcaagaagctcacagcacctcag
aaggagctctctcaggtcaaggtgatcgacatgacaggccgggagcagaaggtgtactac
agctacagccagatcagccacaagcacagtgtgcccgatgaaggggtgccgttgctcgcg
cagctgcctcccacagctggcaaggaagccaaggtgccgggcttcgcgctgcctgagctg
gagcataacctgcagctgctcattgagcgtacggagcaggagatcatccagagcgaccgg
cagctgcagtacgagcgggacatggtggtcagcctgtcgcacgagctcgagaagacagcc
gaggtgcttgctcacgaggagcgggtcatctccaacctcagcaaggtgctggccctggtg
gaggaatgtgagcaccgcatgcagccccatggcgctgacccgctcacgctggatgagtgt
gcccgcatctttgagacactgcaggacaagtactacgaggaataccgcctggcggaccgc
gcagacctcgctgtggccatcgtctacccgcttgtgaaggactacttcaaggattggcac
ccccttgaggacagcaactacggcacccagatcatctccaagtggaagagcctcctggag
aacgaccagttgctgtctcacagcagccaggacctgtcctcagatgccttccacaggctc
atgtgggaggtctggatgccttttgttcggaatgttgtcgcccagtggcaacccaggaac
tgtgagcccatggtggacttcctggacagctgggcacacatcatccctgtgtggatcctg
gacaatatcctggaccagctcatcttccctaagctgcagaaggaggtggacaactggaac
cccctgacagacaccgtcccgatccactcatggatccacccgtggctgccactcatgcag
gcccgcctggagccgctctactcccctgtccgcagcaagctgtctagtgcactgcagaaa
tggcaccccagcgatgcctcagccaagctcatcctgcagccctggaaagaggtcctcacc
cctgggtcctgggaggccttcatgctcaggaacatcgtgcccaagctgggcatgtgcctg
ggtgagctcgtcatcaacccccaccagcagcacatggacgccttttactgggtgatggac
tgggagggcatgatctccgtctccagcttggtgggattgctggagaagcacttcttcccc
aagtggcttcaggtgctgtgctcctggctcagtaatagccccaattacgaggagatcacc
aagtggtacctgggctggaagtccatgttctcagaccaggtgctggcacacccttctgtc
aaggacaagttcaacgaagcgctcgacatcatgaacagggctgtgtcctctaatgttggt
gcctacatgcagccaggtgcgagggagaacattgcctacctcacccacacggagcgcagg
aaggacttccagtacgaggccatgcaggagcgccgggaggctgagaacatggcacagagg
ggcattggtgtggctgccagctctgtgcccatgaactttaaggacctcattgagaccaag
gcggaggagcacaacatcgtgttcatgcctgtcattggcaagcggcacgagggcaagcag
ctctacacctttggccgcattgtcatctacattgaccggggtgtggtgtttgtgcagggc
gagaagacgtgggtgcccacctccctgcagagcctcatcgacatggccaagtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (24)   

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