KEGG   Rattus norvegicus (rat): 288906
Entry
288906            CDS       T01003                                 
Symbol
Rfx1
Name
(RefSeq) MHC class II regulatory factor RFX1
  KO
K09173  regulatory factor X 1/2/3
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    288906 (Rfx1)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Other basic domains
   RF-X
    288906 (Rfx1)
SSDB
Motif
Pfam: RFX1_trans_act RFX_DNA_binding
Other DBs
NCBI-GeneID: 288906
NCBI-ProteinID: NP_001099414
RGD: 1306574
Ensembl: ENSRNOG00000006049
UniProt: A6IYB2 D3ZQ82
Position
19:complement(40966102..40996809)
AA seq 964 aa
MATQSYVTELQAAPQASQPPQAPPQALPQPPPPAAPQPPAAATPQPQYVTELQSPQPQTQ
PPGSQKQYVAELPAAPAPSQPATPAPSPVAQQYIVVTVSEGAMRASETVSEASPSSTASQ
TGVPTQVVQQVQGTQQRLLVQASVQAKPGHVSPLQLTNIQVPQQALPTQHLVVQSPAPGS
KGGQVSLTVHSTQQVHSAPERSPVQANNSTSKTAGTPAGTVQQLQVHSVQQSVPVTQERS
VVQATPQTKAGPVQQLTVQGLQPVHVAQEVQQLPQVPVPHVYSSQVQYVEGGDASYTASA
IRSSTYQYPETPIYTQTAGTSYYEASGTAAQVSTPATSQTVASSGSVPMYVSGSPIVASS
SSSEAGASNSSVGAGGNGGGGSGGGGGGSSGGGSGAGTYVIQGGYMLGNASQSYSHTTRA
SPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTR
RLGTRGNSKYHYYGLRIKASSPLLRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGVANGVA
VGQQSTGLSDISAQVQQYQQFLDASRSLPDFAELDLQGKVLPEGVGPGDIKAFQVLYREH
CEAIVDVMVNLQFTLVETLWKTFWRYNLSQPNEAPPLAVHDEAEKRLPRASLVLLSKFQP
VLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLR
VKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCR
CEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSF
YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLATS
LNPLDPDKDEEEEEEEESEDELPQDISLAAGSESPALGPETLEPPAKLARTDTRGLFVQA
LPSS
NT seq 2895 nt   +upstreamnt  +downstreamnt
atggcaacacagtcctatgttactgagctacaggcagccccacaagcatcccagccacca
caggccccgccccaggccctgccccagccaccacccccagcagcaccccagcctcctgct
gcagcaaccccccagccccagtatgtcaccgagctgcaaagcccccagccccagacgcaa
cctccaggcagccagaagcagtatgtggcagagctcccggctgctcctgcaccctcacag
cctgccacacctgccccatccccggtggctcagcagtatatcgtggtcaccgtctcggaa
ggtgccatgcgggctagtgagactgtgtcagaagccagccccagttccacggcaagccag
accggtgtccccacccaagtggtacagcaggtgcagggcacccagcagcggctgctggtc
caggcaagtgtgcaggccaagccaggccatgtgtcacccctgcagcttaccaacatccag
gtgccacagcaggctctccccacacagcacttggtggtgcagagcccggcgccaggctct
aagggtggccaagtttccttgacggtgcacagcacgcagcaggtgcactctgcccctgag
aggtcaccagtgcaggccaacaactccaccagcaagacagctgggactcctgccggcact
gtgcagcagctacaggtccacagtgtccagcagagtgtccctgtcacccaagagaggtca
gtagtccaggccactccacagaccaaagctggcccagtgcagcagctgactgtgcaggga
ctgcagccagttcacgttgctcaagaggtacagcaactcccgcaggtgcctgtcccacat
gtgtactccagccaggtgcagtacgtggaaggtggcgacgccagctacacagccagcgcc
atccgctctagcacctaccagtaccctgagacgccgatctatacgcagacagcaggcacc
agctactatgaggcttcaggcacggctgcccaggtcagcacgcccgctacttcccagacg
gtggccagcagcggctcggtgcccatgtacgtatccggcagcccgattgtcgccagctca
tccagcagcgaggctggggccagcaacagcagtgtgggtgccgggggcaacgggggaggt
ggcagcggcggcggcggtggcggcagcagcggcggcggcagtggggcaggcacctatgtg
atccaaggcggctacatgctcggcaacgccagccagtcttactcccacaccacccgtgcc
tcgccagccacagtccagtggctcctggataattacgagaccgctgagggcgtgagcctg
ccgcggagcaccctctactgccactacctgctgcactgccaggaacagaagctggagccg
gttaacgctgcctccttcggcaagctcatccgctccgtattcatgggtctgcgtacgcgc
cgtctgggcaccaggggcaactctaagtaccactattacggcctgcggatcaaagccagc
tcacccctgctgcggctgatggaggaccagcagcacatggccatgcgaggccaaccgttc
tcccagaaacagaggctcaagcccatccagaagatggagggcgtggccaacggtgttgct
gtggggcagcagagcacagggctgtcggacatcagcgctcaggtgcagcagtaccagcag
ttcctggatgcctccaggagcctccctgattttgctgagctggacctccagggcaaagtg
ctgcctgagggtgtcggtcctggggacatcaaggccttccaggtcctgtaccgggagcac
tgtgaggccattgtggacgtcatggtaaatctccagtttacactggtagaaacgctgtgg
aagaccttctggagatataaccttagccagcctaacgaggcaccaccactggccgtgcat
gatgaggcagagaagcggctgcccagggccagtctggtgctcctctccaagttccagcct
gtgcttcagtggaccaagcactgtgacaatgtgctgtaccagggcctggtggagatcctt
atccctgatgttctgcggcccatccccagtgccttgacccaagcaatccggaactttgcc
aagagcctggagagctggctgacccatgccatggtgaacatccctgaggagatgctgcgg
gtgaaggtggcagcagccggcgccttcgcacagacgctgcggcgctacacatcgctcaac
cacttggcacaggcagcgcgcgcagtgctgcagaacactgcccagatcaaccagatgcta
agcgacctcaatcgagtggacttcgcaaatgtccaggagcaggcctcgtgggtgtgtcgc
tgcgaggaccgtgtggtgcagcgtctggagcaggacttcaaggtgacgctgcagcagcag
aactcactggagcagtgggcagcctggctggatggcgttgtgagccaggtgctcaagccc
taccagggcagttccggcttccccaaggcggccaagctcttcctcctcaagtggtccttc
tacagctccatggtaatccgggacctgaccctgcgcagtgctgccagctttggctccttc
cacctcatccggctgctctatgacgagtacatgtactacctgatcgagcacagagtggcc
caggccaagggcgagaccccaatcgcagtcatgggagagtttgcaaacctggccacctca
ctgaatcccttggaccctgacaaagatgaggaagaggaggaggaagaggagagtgaggac
gagctgccacaagacatctcactggctgctggcagcgagtcccccgcactaggcccagaa
actctggaaccaccagcgaaactggcgcggactgacactcgtggcctctttgtgcaggcc
ctgccctccagctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (7)   
   UniProt (2)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (2)   
   Pfam (2)   
All databases (23)   

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