KEGG   Rattus norvegicus (rat): 289026
Entry
289026            CDS       T01003                                 
Symbol
Sox13
Name
(RefSeq) transcription factor SOX-13
  KO
K09269  transcription factor SOX5/6/13 (SOX group D)
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    289026 (Sox13)
Transcription factors [BR:rno03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    289026 (Sox13)
SSDB
Motif
Pfam: HMG_box HMG_box_2
Other DBs
NCBI-GeneID: 289026
NCBI-ProteinID: NP_001099422
RGD: 1309674
Ensembl: ENSRNOG00000028353
Vega: OTTRNOG00000000634
UniProt: A6IC79
Position
13:complement(47383145..47427572)
AA seq 612 aa
MSVQSPVSVQLAPDSASTMVNCTVKSEEKKEPCHEAPQGTATAVEPQPGDPALASQDATN
SKAPAQDCASPQSSGSPDPKRPAASEAASGSQERLDFNRNLQEVVPAIEKLLSSDWKERF
LGRSSVEAKDVKGTQESLAEKELQLLVMIHQLSALRDQLLTAHSEQKNMAAMLFEKQQQQ
MELARQQQEQIAKQQQQLIQQQHKINLLQQQIQVNMPYVMIPAFPSSHQPLPVTPDSQLA
LPIQPIPCKPVEYPLQLLHSPPAPVVKRPGVATHHPLQEPPQPLNLTAKPKVSELPNTSS
SPSLKMNSCGPRPSSHGAPTRDLQSSPPNLPLGFLGEGDAVTKAIQDARQLLHSHSGALE
NSPSAPFRKDLISLDSSPAKERLEENCVHPLEEAMLGCDVDGSRHFSESRNSSHIKRPMN
AFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYP
DYKYKPRPKRTCVVEGRRLRVGEYKALMRTRRQGARQSYAIPPQAGQAQVSSDILFPRAA
GMPLARPLVEHYDPQGLDPNMPVIINTCSLREEGEGTDDRHSVADGEMYRYSEDEDSEGD
EKSEEELVVLTD
NT seq 1839 nt   +upstreamnt  +downstreamnt
atgtccgtgcagagccccgtctctgtgcagctggccccagacagcgctagcaccatggtg
aactgcaccgtcaagtctgaggagaagaaggagccttgccacgaagctccccaaggcaca
gccactgcagtggagccccagcctggagacccagccctggcctctcaggatgccaccaac
tccaaagcccctgctcaggactgtgcctcaccacagagcagtgggtccccagaccccaag
agaccagcagcttccgaggctgcttcgggaagccaggagcggctggacttcaaccgcaac
ttacaggaagttgttccagccattgagaagctgctgtccagtgactggaaggagaggttt
ctgggaagaagctctgtggaagctaaggatgtcaaagggacccaagagagcctggctgag
aaggagctccagcttctggtcatgatccatcagctctccgcccttcgggaccagctcctt
acggcccactctgagcagaagaacatggctgccatgctgtttgagaaacagcagcagcag
atggaactggccaggcagcagcaggagcagatcgccaagcaacagcagcagctgattcag
cagcagcacaagatcaacctcctccagcagcagatccaggttaacatgccttatgtcatg
atcccggcctttccctcaagtcaccagcctttgcctgtcactcctgactcccagctggct
ttgcccattcagcccattccctgcaagccagtggagtacccactgcagctgctgcacagc
ccgcctgcccccgtggtgaagaggcctggggtggccacccaccaccccctgcaggagccc
ccacaaccactgaacctcacagccaagcccaaggtctctgagctacccaacacctccagc
tctcccagcctgaagatgaacagttgtgggcctcgcccctccagccatggggctcccaca
agggatctgcagtccagccccccgaacctgcctctgggcttccttggggaaggggacgct
gtcaccaaagccatccaggatgctcggcaactgctacacagccacagtggggccttggaa
aactcccccagtgccccattccgaaaggacctcatcagcctggactcctccccagccaag
gagcggctggaggagaactgtgtgcatcccctggaggaagccatgctgggctgtgacgtg
gatggctctcgccatttctccgagtctcggaacagcagccacatcaagagacccatgaat
gccttcatggtgtgggccaaggatgagcggaggaaaattcttcaagccttcccagatatg
cataactccagcatcagcaagatccttggttctcgctggaagtccatgaccaaccaggag
aagcagccgtactacgaggagcaggcccgtctgagccgacagcacctggagaaatatccc
gactacaagtacaagccaaggcctaaacgcacctgtgtcgtggagggccggcggctgcga
gtgggcgagtacaaagccctgatgaggacacggcgccagggtgctcgccaaagctacgcc
atccccccgcaggctggccaggcacaggtgagctcagatatcctgttccctcgggcagca
ggcatgcccttggcacgtccactggtggagcactatgacccccagggcctggaccccaac
atgcctgtcatcatcaatacctgcagtctccgggaggaaggggagggcacagatgacagg
cactcggtggccgatggagagatgtaccggtacagcgaggatgaggactcagagggtgac
gagaagagtgaggaggagctggtggtactcacagactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (2)   
   Pfam (2)   
All databases (25)   

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