KEGG   Rattus norvegicus (rat): 289561
Entry
289561            CDS       T01003                                 
Symbol
Polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03020  RNA polymerase
rno03420  Nucleotide excision repair
rno05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    289561 (Polr2b)
  09124 Replication and repair
   03420 Nucleotide excision repair
    289561 (Polr2b)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    289561 (Polr2b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    289561 (Polr2b)
   03400 DNA repair and recombination proteins [BR:rno03400]
    289561 (Polr2b)
Enzymes [BR:rno01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     289561 (Polr2b)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     289561 (Polr2b)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      289561 (Polr2b)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 289561
NCBI-ProteinID: NP_001099472
RGD: 1309477
Ensembl: ENSRNOG00000024779
UniProt: A6JCV0 G3V8Y5
Position
14:complement(31151534..31189222)
AA seq 1174 aa
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq 3525 nt   +upstreamnt  +downstreamnt
atgtatgacgccgacgaggatatgcaatatgatgaagatgatgatgaaatcactccagat
ttgtggcaggaagcatgctggatcgtgatcagttcttattttgatgaaaaaggcttggtc
agacagcagctggattcctttgacgagtttattcagatgtctgttcaaagaattgtggaa
gatgcaccaccgattgacctgcaggctgaagcccagcacgctagtggggaggttgaagag
ccgccaagatatttactgaagtttgaacaaatttacctctccaaacctactcattgggaa
agagatggtgccccttcaccaatgatgccaaatgaagccaggttaagaaatctcacgtac
tccgccccgctttacgtggacataacgaagacggtcattaaagagggtgaagagcagctg
cagactcagcaccagaaaaccttcatcgggaaaatccccattatgctgcgctccacgtat
tgcttgttgaatggcttaacagaccgtgacttgtgtgagctgaatgagtgtcctttggat
cctggtggctattttattattaatggatcagaaaaggttctgatagctcaagagaaaatg
gcaacaaacacagtctatgtgtttgccaaaaaggattccaagtatgcctatacaggagaa
tgccgctcatgcctagagaattcttcccgacccaccagtactatatgggttagcatgctg
gccagaggaggacagggtgcaaagaagagtgcaattggccagcgcatcgtggcgacatta
ccatatatcaagcaagaagttcccatcataattgtgttcagagcattaggctttgtgtct
gatagagatattttagagcacatcatttatgacttcgaagacccagagatgatggaaatg
gttaaaccatctctcgatgaagcatttgtcatccaagagcagaatgttgccttaaacttc
attggttcaagaggggcgaagcctggtgttactaaggagaaaagaattaaatatgcaaaa
gaagtcttacagaaagagatgcttccgcatgtcggtgtcagtgatttctgtgagaccaaa
aaggcctatttcttggggtacatggttcataggttacttctagcagccttgggtagaaga
gaactagatgacagagatcactatggcaacaagagattggatcttgctgggcctctgctt
gcgttcttatttagaggcatgtttaagaatttgctgaaagaagtacggatctatgcacag
aagtttattgaccgcggaaaggactttaacctagagttggcaattaagacaaggatcata
tccgatgggctaaaatactctttagccactgggaactggggtgaccagaagaaagctcac
caagccagagctggagtgtcgcaggtactgaaccgcctgacttttgcgtctactctttct
cacctgcgtcgtttaaactctcctattggcagagatggcaagctagcaaagccgagacag
ttgcataatacattgtgggggatggtgtgtcctgctgaaactccagagggccatgctgta
ggacttgtgaagaatttagccctgatggcttatatttcagttggatctcaaccttctcca
attttggaatttttggaagaatggagcatggaaaacttagaggaaatttcccctgcagct
attgccgatgcaaccaagatttttgttaatggctgctgggttggaatccataaagacccg
gaacaactcatgaacacactcaggaaattacggcgtcagatggacatcattgtatccgaa
gtttctatgatcagagatatccgcgagcgtgagattcggatctatacagacgcaggccgt
atttgtagaccacttctaattgtggaaaagcaaaagcttcttttgaagaagagacacatt
gaccagttgaaagagagagaatataacaactacagttggcaggatctggtagccagtggg
gtagtagagtatattgataccctggaagaagaaaccgtgatgcttgcaatgactccagat
gatttgcaggagaaagaagtagcttattgctccacctatacccactgtgagattcaccca
tcaatgattcttggcgtctgtgcatctattattccttttcctgatcataaccagtcccct
agaaacacgtaccagtctgctatgggcaagcaggctatgggagtttatatcaccaacttc
cacgttcggatggacaccttggcgcacgttctctactatcctcagaagccccttgtgact
acacggtctatggagtatctccggtttagagaactgccagcaggaatcaactcaattgtg
gccattgcatcatacacgggctataatcaagaagactctgttatcatgaatcgttcagct
gtggatcgaggctttttcaggtctgttttctaccgatcatacaaagaacaagagtctaaa
aaaggatttgatcaagaagaagtgttcgagaagcctacacgtgaaacatgtcagggcatg
aggcatgccatttatgacaagttggacgatgatggcttgatagcgccaggggtccgagtg
tcgggagacgatgttattataggcaaaacggtcaccctccctgagaacgaggatgagctg
gagagcaccaacaggcgctacaccaagagggactgcagcaccttcctcagaaccagtgag
acaggcattgtggaccaggtcatggtcactctcaaccaggaaggatataaattttgtaaa
ataagggtacgctctgttagaattccgcagatcggagacaaatttgctagccgacatggt
cagaagggtacttgtggtattcagtatagacaagaggacatgccgttcacttgtgaaggc
ataactcctgacatcatcataaacccccacgccatcccctctcggatgacgattggtcac
ttgattgaatgtctccaagggaaggtctctgcgaacaagggtgaaattggtgatgctact
ccgtttaatgatgctgtcaatgtgcagaagatttctaatcttttatctgactacggctac
catctcagaggaaatgaggtgctctacaatggattcactggtcgcaaaatcacatcgcag
atttttattggccccacttactaccagcgtttgaagcatatggtggatgacaaaattcat
tctcgtgctcgggggcccattcagattcttaacagacagcccatggagggcagatcgcgt
gatggtggcctgcgctttggagaaatggagcgagactgtcagatcgcacatggtgcagca
cagttcttaagagaaaggctgtttgaagcatcagatccgtatcaggttcacgtttgtaat
ctttgtggaataatggcaattgctaacaccaggactcacacatacgaatgcaggggatgc
cgcaataagacccagatctccttggtgcgaatgccgtatgcgtgcaagctgttgttccag
gagctcatgtccatgagcatcgcaccacggatgatgagtgtttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (28)   

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