KEGG   Rattus norvegicus (rat): 289582
Entry
289582            CDS       T01003                                 
Symbol
Fip1l1
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1
  KO
K14405  pre-mRNA 3'-end-processing factor FIP1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    289582 (Fip1l1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    289582 (Fip1l1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     289582 (Fip1l1)
SSDB
Motif
Pfam: Fip1
Other DBs
NCBI-GeneID: 289582
NCBI-ProteinID: NP_001008296
RGD: 1309336
Ensembl: ENSRNOG00000002275
UniProt: Q5U317 B6RIU0
Position
14:complement(33969341..34030871)
AA seq 536 aa
MSAGEVERLVELSGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANPP
SGIEEEAAENGVAKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNLN
IKAGGRVYGNTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFN
EDTWKAYCEKQKRIRMGLEVIPVTSTTNKITVQQGRTGNSEKEAALPSTKAEFTSPPSLF
KTGLPPSRRLPGAIDVIGQTITISRVEGRRRANENSNIQVLSDRSATEVDNNFSKPPPFF
PPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGFPPPPGAPPPSLIPTIESGHSSGYDSRS
ARAFPYGNVAFPHLTSSAPSWPSLVDTTKQWDYYARREKDRDRDRERDRDRERERDRDRE
RERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRERRHREKEE
TRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKEAGSEPVPEQESTEAAPAE
NT seq 1611 nt   +upstreamnt  +downstreamnt
atgtcggccggcgaggtggagcgtctggtggagctgagcggcgggaccggaggggatgag
gaggaagagtggctgtatggcggcccgtgggacgtgcatgtgcacagtgatttggcaaag
gatctagatgaaaatgaagttgaaaggccagaagaagaaaatgccagtgctaatcctcct
tctggaattgaagaggaagctgctgaaaatggcgtggcgaaaccgaaagtgaccgagact
gaagacgacagtgatagtgacagtgacgatgatgaagatgacgttcacgttactattgga
gacatcaaaacgggagctccacagtatgggagttatggaacagcaccagtaaatcttaat
atcaaggcagggggaagagtttatggaaatacaggaaccaaagtcaaaggagtagacctc
gatgcccctggcagcattaatggagttccactcttggaagtagatttggattcttttgaa
gataaaccatggcggaaacctggtgctgatctttccgattattttaattatggctttaat
gaagatacttggaaagcttactgtgaaaaacaaaagaggatccgaatgggactggaagtt
atacccgttacttcaacgacaaacaagattacggtacagcaagggagaactggaaattca
gagaaagaagcagcacttccatctacaaaagctgagtttacttctccgccatcattgttc
aagactggtctgccaccaagcaggagattacctggagcaatcgatgtcattggtcaaaca
ataaccatcagccgagtagaaggaagacggcgtgcaaatgagaacagcaatatacaggtt
ctttctgacagatctgccactgaagtagacaacaatttcagcaaaccacctccatttttc
cctccaggggctcctcctactcaccttcctcctcctccatttcttccacctcctccaact
gtcagcactgctccacctttgattccaccaccaggtttcccccctccaccaggcgctcca
cctccatctcttataccgacaatagaaagtggccattcctctggttacgacagccgttct
gcacgggcgtttccatatggcaatgttgcctttccccaccttaccagttccgctccctca
tggcctagccttgtggataccactaagcagtgggactattatgcacggagagaaaaagat
cgagatcgagaccgagagagagaccgagacagagaaagggagagagaccgggacagagaa
agggagcgcacccgggagcgagagcgggagcgggaccacagccccaccccaagtgttttc
aacagtgatgaagagcgatacagatacagggagtatgcagagagaggctatgagcgccac
agagctagtcgggagaaagaagagcggcacagagaacgacggcacagagagaaggaggaa
acaagacacaagtcctctcgcagtaatagtagacgtcgtcatgaaagtgaagaaggggac
agtcacagaagacacaagcacaaaaagtctaaaaggagcaaagaaggaaaagaggctggc
agcgagccggtccctgagcaggagagcacggaagctgcccctgccgagtag

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