KEGG   Rattus norvegicus (rat): 289780
Entry
289780            CDS       T01003                                 
Symbol
Ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56 isoform 2
  KO
K14810  ATP-dependent RNA helicase DDX56/DBP9 [EC:5.6.2.7]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:rno03009]
    289780 (Ddx56)
Enzymes [BR:rno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     289780 (Ddx56)
Ribosome biogenesis [BR:rno03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    289780 (Ddx56)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22
Other DBs
NCBI-GeneID: 289780
NCBI-ProteinID: NP_001401918
RGD: 1303195
Ensembl: ENSRNOG00000004670
Position
14:complement(85325942..85336262)
AA seq 546 aa
MEDQEALGFEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAA
YAIPMLQLLLHKKATGPVMEQAVRGLVLVPTKELARQAQSMIQQLASYCARDVRVANVSA
AEDSASQRAVLMEKPDVVVGTPSRILNHLQQKNLKLRDSLELLVVDEADLLFSFGFEDEL
KSLLCHLPRIYQAFLMSATFNEDVQTLKELVLHNPVTLKLQESQLPGPDQLQQFQVVCET
EEDKFLLLYALLKLSLIRGKALLFVNTLERGYRLRLFLEQFSIPSCVLNGELPLRSRCHI
ISQFNQGLYDCVIATDAEILGPQVKAKRQGRGSKGDKASDPESGVARGIDFHHVSAVLNF
DLPPTAEAYVHRAGRTARANNPGIVLTFVLPTEQSSLGKIEELLSGEGQAPILLPYQFQM
EEIESFRYRCRDAMRSVTKQAIREARLKEIKEELLHSEKLKTYFEDNPRDLQLLRHDLPL
HPAVVKPHLGNVPDYLVPAALRGLVHPRKKRRKMPFSRKAKKVKTQNPLRDFKHRGKKPK
PTAKPS
NT seq 1641 nt   +upstreamnt  +downstreamnt
atggaggaccaagaagcgctgggttttgaacacatggggctggatccccggctcctgcag
gctgtcaccgacttgggctggtcacgacctacgctaatccaggaaaaagccatacctctg
gcgctggaggggaaggacctcctggcccgcgcccgcacaggctccgggaagaccgcagct
tatgctattccgatgctgcagttgcttctccacaagaaggcgacaggtcccgtaatggaa
caagctgtgaggggccttgtccttgttcctactaaggagctggcaaggcaggcccagtcc
atgatccagcagctggcctcctactgtgctcgcgatgtgagagtggctaatgtctcagcc
gctgaagactcagcttctcagagagctgtgttgatggagaagcccgatgtggtggtgggg
accccatcccggatattaaaccacttgcagcagaaaaacttgaaactccgggactctctg
gagctgctggtagtggacgaagctgaccttcttttttcctttggctttgaggatgaactc
aagagtcttctctgtcacttgcctcggatttaccaggcttttctcatgtcggccactttc
aatgaggatgtgcaaaccctgaaggagctagtgctacataacccggttactctcaagtta
caggagtcccagctgccggggccagatcagctccagcagtttcaggtggtctgtgagact
gaggaagacaagttcttgctgctgtacgctctgctcaagctgtccctgatccggggcaaa
gcgcttctctttgtcaacactctagagagaggttaccggctccgtcttttcctggagcag
ttcagcattccctcctgcgtgctcaatggagaactcccactgcgctccaggtgccacatc
atctcacagttcaaccaaggcttgtatgattgcgtcatagccacagacgcagaaatcctg
ggaccccaagtcaaagccaagcggcaaggccgcgggtccaaaggagacaaggcatctgat
cctgagtcaggtgtggcccggggcatagacttccaccatgtgtctgccgtcctgaatttt
gaccttcctcccactgcagaagcctatgtccaccgagctggcaggacagctcgagccaac
aacccaggcatagttctgaccttcgtgctgcccacggaacagtcttctttgggaaagatt
gaggagcttctcagtggagagggccaggcccccatcctgcttccctaccagttccagatg
gaggagattgaaagctttcgctatcgatgcagggatgccatgcgctccgtgacgaagcag
gccattcgagaggcaaggctgaaggagatcaaggaggagcttctgcactcagagaagctc
aagacatactttgaagacaaccccagggacctccagctgctacgccatgatctgcccttg
cacccggcagtggtgaagcctcatttgggcaatgtccccgactacttggttcctgccgct
cttcgtggccttgtacatcctcgaaagaaacggagaaagatgcccttctctagaaaggct
aagaaggtgaagacccagaacccactgcgtgacttcaagcacagggggaagaagcctaaa
cccacagcaaagccttcttga

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (23)   

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