KEGG   Rattus norvegicus (rat): 290629
Entry
290629            CDS       T01003                                 
Symbol
Ushbp1
Name
(RefSeq) harmonin-binding protein USHBP1
  KO
K21881  Usher syndrome type-1C protein-binding protein 1
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:rno03037]
    290629 (Ushbp1)
Cilium and associated proteins [BR:rno03037]
 Primary cilia and associated proteins
  USH complex and associated proteins
   290629 (Ushbp1)
SSDB
Motif
Pfam: USHBP1_PDZ-bd FlaC_arch
Other DBs
NCBI-GeneID: 290629
NCBI-ProteinID: NP_001028859
RGD: 1310859
Ensembl: ENSRNOG00000023485
UniProt: Q3T1I3 A6K9T1
Position
16:complement(18091311..18101927)
AA seq 680 aa
MSARATRPRSRRGRHPLPGELDPVAESSEEVDTTNGSFETKPELLQEHLGPSLQGPGNRI
KEDCDVGSHGVLPLSPEERREPEVEAHQALQEAPLDTGPAEITAPNVYETLKCRLSSLEA
VVAAWRRHSLSFSKPVEAEDRDPGAPGSFGNEEEASGPGQQEAAHFIERNAWLRLALGTR
EEELARTQASLQDAQAENETLQRQVQELEDSLMQLEASPPPSMLRAGRRNSNSSSSGAER
RPWAPQDSPMAHPFLQRLRSDSSTQSFGCLSTQRPSPEMYLMEDQMGQLQGNIEKLKCFN
RLLLAVLQGYKGRCESLSIKLGKREAEATALHLALQYSKDCEEVYEVLLALKTAGLGAGV
GATNGDLQAAEKEASRLLVKKEVAMDVKTPQPSPEGSSVDKPTPEELAAQLHGYVQHLRE
RWALLKIPPVLDPATAPKPTMPHAEATVQTILEIQPGPTLPQLEKSQIQQDLAATRDGLA
DLVLRLQLAQREKRGLELREAALRAQGPALRLLLQQLRWEQAHLMGDGSSGGSSEDPSSE
EEAGEDRQQHYQGPPALLGGQMGKVWDSETVSQELSASLTRAVDLRAQLQSLRRQLEQMA
QKGRTRGAQSAELNRELCKAHSALALAFREAHRKQEEQCRKLEQQMARMQAQQAEELAVL
TATARALGDPGAPQPVQTFL
NT seq 2043 nt   +upstreamnt  +downstreamnt
atgagtgcccgggccacacgaccccgaagccggcgagggaggcatcctctgcctggggag
ctggacccagtagctgagagctcagaggaggtagataccaccaatgggagcttcgagact
aaacctgagctgcttcaggaacatcttggtcctagcctgcagggccctgggaaccggatc
aaggaggattgtgatgtgggatcccatggggtcctacccttgagcccggaagaacggcgc
gagcctgaggtggaagcccaccaggccctgcaagaagcccctctggatactggccctgct
gagataacagcacccaatgtgtatgagaccttgaagtgcaggctgagctccctggaggca
gttgtagctgcctggcgccgccactcgctaagcttttcaaagccagtggaggcagaagac
agagacccgggagctccggggtcttttggtaatgaggaagaagcctctggacctggacag
caggaggcagcgcacttcatagagaggaacgcctggctccggctggccctgggcacccgg
gaggaggaactggcgcggactcaggcttcactgcaggacgcccaggcagagaatgagact
ctgcagagacaggtacaggagctggaggattccctgatgcagctggaggcctccccgcct
ccctccatgctcagagcaggccgtagaaacagcaactccagcagttctggggcagaaagg
agaccctgggcacctcaggactcccccatggctcacccctttctccaacgccttcggagt
gactccagcacccagagctttgggtgcctttccacacagcgtccatccccagagatgtac
ctcatggaagaccagatgggacagctccaggggaacattgagaagttgaagtgcttcaac
cgcctcctgctggctgtgctccagggctacaagggccgctgtgagagcctcagcattaag
ctgggcaagagagaggctgaggccacagccctgcacctggctctacaatatagcaaggac
tgtgaggaggtgtatgaggtgctgcttgctctgaagacagctggtctaggagctggagtt
ggagctaccaatggcgacctgcaggctgctgagaaggaggcctctaggctgctggtgaag
aaggaagtagccatggatgtaaagacaccccagcccagtccagagggcagtagtgtggac
aagcctacaccagaggaactggctgctcagctccacggctatgtccagcatctccgagaa
cgctgggctctgctgaagatccccccagtacttgatcctgccactgcacccaagcccact
atgccccatgcagaagcaacagtgcagaccattctggagatacagcccgggcccaccttg
cctcagctggagaagtctcagatccagcaggacctagcggctactcgggacggtctggct
gacctggtgctgcggctgcagctagcacagcgagagaagcgcgggctggagcttcgggag
gcggctctgcgggcccagggccctgctctccgactgctcctgcagcagcttcgctgggag
caggctcatctcatgggcgatggcagcagcggaggcagcagcgaggacccgagcagcgag
gaggaggctggggaggacagacagcagcactaccagggtcctcctgctctcctgggtggt
cagatgggcaaagtgtgggactctgagaccgtatcccaggaactgtcagcatctctgacc
cgggcagtggacctgcgggcgcagctgcagtccctgcggcggcagctggaacagatggct
cagaagggccgaaccagaggagctcagagtgctgagctgaacagagagctgtgcaaggct
cacagcgctctggctttggccttcagagaagcccaccggaagcaggaagagcaatgccgg
aagttggagcagcagatggctcggatgcaggctcagcaggcagaggagttggcagtgctg
acagctaccgccagggccctgggggatcctggggcaccccagccagtccagaccttcctg
tag

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Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

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