KEGG   Rattus norvegicus (rat): 290864
Entry
290864            CDS       T01003                                 
Symbol
Usp4
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 4
  KO
K11835  ubiquitin carboxyl-terminal hydrolase 4/11 [EC:3.4.19.12]
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:rno01002]
    290864 (Usp4)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rno04121]
    290864 (Usp4)
Enzymes [BR:rno01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     290864 (Usp4)
Peptidases and inhibitors [BR:rno01002]
 Cysteine peptidases
  Family C19: ubiquitin-specific protease family
   290864 (Usp4)
Ubiquitin system [BR:rno04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   UBP/USP
    290864 (Usp4)
SSDB
Motif
Pfam: UCH Ubiquitin_3 DUSP UCH_1 USP7_C2 USP7_ICP0_bdg Choline_bind_1
Other DBs
NCBI-GeneID: 290864
NCBI-ProteinID: NP_001128484
RGD: 1587387
Ensembl: ENSRNOG00000054863
UniProt: B2GUZ1
Position
8:117912576..117957934
AA seq 961 aa
MAEGRGTHERPDVETQKTELGALMGTTLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVG
EHNLFPGPIDNSGLFSDPESQTLKEHLIDELDYVLVPTEAWNKLLNWYGCVEGQQPIVRK
VVEHGLFVKHCKVEVYLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERE
TRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGTWPRQTLQSKSSTAPSRN
FTTSSKPSASPYSSMSASLIANGDSTNSSGMHNSGVSRGGAGFSASYNCQEPPSPHIQPG
LCGLGNLGNTCFMNSALQCLSNTGPLTEYFLKDEYEAEINRDNPLGMKGEIAEAYAELIK
QMWSGRDTHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFILDGLHEDLNRVKKKPYLEP
KDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLP
LPLKKDRIMEVFLVPADPHCRPIQYRVTVPLMGAISDLCEALSKLSGIAAENMVVTDVYN
HRFHKIFQMDEGLSHITPRDDIFVYEICTTPMDGSEYITLPVYFREKKSRPSSTSSGAVL
YGQPLLVSVPKHRLTLESLYQAVCERISRYIKQPLPEEFLSSPLEPGACNGSRGSYEGDE
EEMDHQEEGKEQLSEVEESGEDSQGGDPTETTQKAKGPPRHKRLFTFSLVNSCGTADINS
LATDGKLLKLNSRSTLAIDWDSETRSLYFDEQESEACEKHTSMSQPQKKKKAAIALRECI
ELFTTMETLGEHDPWYCPTCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVV
EFPVRALNMSEFVCDRAARPYVYDLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSV
SLASEDQIVTKAAYVLFYQRRDDECPSTSSPVSFPGSDGGAKLSSSQQDLGEEEAYTMDT
N
NT seq 2886 nt   +upstreamnt  +downstreamnt
atggcggaaggccggggcacccatgagcgaccggatgtggagacccagaagacggagctc
ggagccttgatggggaccacgctccagcgtggggctcagtggtatctgatcgacagccgg
tggttcaagcagtggaagaagtacgtcggctttgacagctgggacatgtacaacgtgggg
gagcacaatctctttcctggaccgattgacaactctgggctcttctcagatcctgagagt
cagaccttgaaggaacacttaatcgatgagctggactatgtgttggttccaactgaagcc
tggaataaattgctaaattggtatggctgtgtggaaggccagcagcctattgtcagaaaa
gttgtggagcatggcctgtttgtcaagcactgcaaagtggaagtgtatttgctggagttg
aagctctgtgagaacagtgaccccaccaatgtgctaagttgccattttagcaaagcagat
accattgcaactattgagaaggagatgaggaagctcttcaacatccctgcagagcgtgaa
acacgactttggaacaaatacatgagcaacacctatgagcagttgagcaagctagacaac
actatccaggatgctgggctgtaccagggtcaggtgctagtaattgagccccaaaatgaa
gacggcacatggcccaggcagaccctgcaatcaaaatcaagcactgcacctagcagaaat
tttactacctcttcaaaaccatccgcaagtccctattcctcaatgtctgcctctctcatt
gcaaatggtgatagcactaacagctctgggatgcacaactccggtgtcagcaggggtgga
gctggcttctctgcctcgtataattgccaggagcccccatcacctcatatccagcctggc
ctctgtggactcggaaacctgggaaacacctgttttatgaattctgctttgcagtgcctg
agcaacactggtccactgactgagtactttctcaaagatgagtatgaggccgagatcaac
agagacaaccctctggggatgaaaggggagattgcagaggcctatgcagagctcatcaag
cagatgtggtctggaagggacacccacgtagcaccacggatgttcaaaacgcaagtggga
cgtttcgcccctcagttttctggctaccaacaacaagactctcaagagctgttagccttt
attctagatggattgcatgaagacctgaaccgagtaaagaagaagccttacctggagcca
aaggatgccaatgggcgaccagatgcggtggtagcaaaggaagcctgggaaaatcacagg
ctgaggaatgactctgtgattgtggatactttccatggccttttcaaatctactttggtt
tgcccagaatgtgctaaagtttctgtgacctttgacccattttgctatctaactctccca
ctgcctttgaagaaagatcgaattatggaggtcttcctggttcctgctgaccctcattgc
agacctatccagtaccgtgtgactgtgccattgatgggggccatttctgacctgtgtgaa
gcactctccaagctgtctggcattgctgcagaaaatatggtggtcactgatgtgtataat
caccgcttccacaaaattttccaaatggatgaaggtttaagccacatcacgcctcgagat
gacatttttgtgtatgagatctgcaccactcccatggatggctcagaatatatcactctc
ccagtctacttcagagaaaagaagtccaggccatcgagtacttcctctggggccgtgctc
tatggacagccacttcttgtttctgtccctaagcacagactaaccctcgagtccttatac
caggctgtttgtgaacgtatcagccgctatataaagcagcctttgcctgaggagtttctc
agctctcccttagagcctggggcctgcaatggctctaggggtagctatgaaggagatgaa
gaagaaatggatcatcaagaggaagggaaagaacagctttctgaagtggaagaaagtggt
gaggacagtcagggaggggaccctactgagaccacccaaaaggcgaaaggcccgccccgc
cacaagaggcttttcaccttcagcctcgtgaactcctgtggaactgctgatatcaactcg
ctggccactgacggaaaactcctcaagctcaactctcgatccacactggccattgactgg
gacagtgagacccgaagcctttactttgatgagcaagaatctgaggcctgtgagaagcac
acgagcatgtcccagcctcagaagaagaagaaggctgcaatagccctgcgggagtgcatc
gagctctttactaccatggagacccttggggagcatgacccctggtactgtcccacctgt
aagaagcaccaacaggcaacaaaaaagtttgatttgtggtctttgcccaagatcctggtg
gttcatctcaaacgtttctcctataacagatactggcgggataaactggacacagttgtg
gaattcccagtaagagctctgaacatgtccgagtttgtgtgtgaccgggcagcaaggcct
tatgtctatgacctgattgctgtgtccaatcactatggcgctatgggggtcggtcactat
actgcatatgcgaagaacagactgaatgggaaatggtattactttgatgatagcagcgtg
tccctggcctctgaggatcagatagtgacgaaggccgcctacgtgttgttttaccagcgt
cgggatgatgagtgtcccagcacctcctcacctgtcagcttcccgggttctgatggaggg
gcgaagctcagcagctcacagcaggacttgggggaagaggaggcttacaccatggacacc
aactga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (8)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (6)   
DNA sequence (10)   
   RefSeq(nuc) (8)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (37)   

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