KEGG   Rattus norvegicus (rat): 291615
Entry
291615            CDS       T01003                                 
Symbol
Pabpc2
Name
(RefSeq) poly(A) binding protein, cytoplasmic 2
  KO
K13126  polyadenylate-binding protein
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    291615 (Pabpc2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    291615 (Pabpc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    291615 (Pabpc2)
   03041 Spliceosome [BR:rno03041]
    291615 (Pabpc2)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     291615 (Pabpc2)
   mRNA cycle factors
    Stress granule specific factors
     291615 (Pabpc2)
Spliceosome [BR:rno03041]
 Complex C
  Other components
   Complex C specific factors
    291615 (Pabpc2)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded RRM_3 YflT HATPase_c
Other DBs
NCBI-GeneID: 291615
NCBI-ProteinID: NP_001099621
RGD: 1310759
UniProt: A6J3I1
Position
18:31905327..31907595
AA seq 630 aa
MNSSDPGCPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFE
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFS
AFGNILSCKVVCDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKERE
AELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKN
LDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYIQRMASVRSGPNSLINAYQPAPSGYSVAAVPQTQNCAP
CCPSQIVQPSPSTRWTAQGARPHPFPNVSGASHPAAPKSSFTTVRPSSSHVPQVMAAQRI
TNTSAQTTGQRPALASSPATTPVRSIPQYKYATGVRNSQQHLNAQLVQQPSVCIQGQEPW
TASTLGTAPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEPLHMLDSPESLCSR
AQEAVSALQAHQANEAAQKAAGSTSGVPTV
NT seq 1893 nt   +upstreamnt  +downstreamnt
atgaactccagcgacccaggctgccccatggcctcgctctatgtgggggacctgcaccct
gatgtgacagaggcgatgctctatgagaagttcagctccgccgggcccatactttccatc
cgggtatacagggatgtgatcacacgtcgctccctgggctatgcttccgtgaactttgag
cagcctgctgatgcagagcgtgctttggacaccatgaattttgatgtcatcaagggcaag
ccagtccgcatcatgtggtctcagcgtgatccatcacttcgcaggagtggagtaggcaac
gtgttcattaaaaatttaaacaagaccattgacaataaagcgctatatgatacattctct
gcttttggcaatatcctttcctgcaaggtggtctgcgatgagaatggctcgaagggccat
ggatttgtacattttgagacagaggaggcagcggaaagagccatcgagaaaatgaacggg
atgcttctgaatgaccgcaaagtgtttgttggacagtttaagtctcggaaagaacgagaa
gcagagcttggaacgaggaccaaggagtttaccaacgtttacatcaagaactttggggac
cgcatggatgataagaccctgaatggcctcttcggcaggtttggacaggtcctaagtgtg
aaagtcatgaccgacgaaggtggaaaatcaaaaggattcgggttcgtcagctttgaaagg
cacgaagatgcgcagaaagcggtggatgagatgaatgggaaggaactcaatggaaaacac
atttatgtgggcccagctcagaaaaaggtggaccgtcacatagaacttaagcgcaaattt
gagcaggtgacccaagacaggggcatcagataccagggcattaacctttatgtgaaaaat
ctcgatgatggtattgatgatgaacgtcttcagaaagaattttctccgtttggaacaatc
accagtacaaaggttatgacagagggtggtcgcagtaaaggattcggttttgtgtgtttc
tcctccccagaagaagccacaaaagctgtttcagaaatgaatggtagaattgtggccacg
aaaccactttatgtagctttagcccagcgcaaagaagaacgtcaggctcatctcactaac
caatatattcaaagaatggcaagtgtccgatctgggccgaactctcttatcaacgcttac
caaccagcaccttctggctactccgtggctgctgtcccacaaactcagaactgtgcccca
tgctgccctagccaaattgttcaaccaagtccaagtactcgctggactgctcagggggcc
cggcctcatccattccccaacgtgtctggtgctagccaccctgctgctcctaaatcgtcg
tttactacggtaagaccaagttcttcacatgttcctcaagtcatggcagcacagcgcatc
actaacacatcagcacagacaacgggtcaacgtcctgccctagcctcttcacctgcaact
actcctgttcgctcgattccacagtataagtatgccacaggagtccggaactcccagcaa
catcttaatgcccagctggtgcaacagccttctgtttgcatacagggccaggaaccttgg
actgcttccacattaggaactgctcctcaagagcaaaagcaaatgttgggtgaaaggtta
tttcctctcattcaagccatgcacccgaccctggctggtaagatcacgggcatgttgctg
gagattgataactcggaaccacttcatatgctcgactctccagagtctctgtgttctaga
gctcaggaagccgtgtcggcactccaggcccaccaagctaacgaggctgcccagaaagct
gctggcagtacctctggtgtcccaactgtttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (21)   

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