KEGG   Rattus norvegicus (rat): 291797
Entry
291797            CDS       T01003                                 
Symbol
Thoc1
Name
(RefSeq) THO complex subunit 1 isoform 2
  KO
K12878  THO complex subunit 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03013  Nucleocytoplasmic transport
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    291797 (Thoc1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    291797 (Thoc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    291797 (Thoc1)
   03041 Spliceosome [BR:rno03041]
    291797 (Thoc1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     291797 (Thoc1)
Spliceosome [BR:rno03041]
 Complex C
  Other components
   EJC/TREX
    291797 (Thoc1)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    291797 (Thoc1)
SSDB
Motif
Pfam: efThoc1 Death bDLD3 HsdM_N
Other DBs
NCBI-GeneID: 291797
NCBI-ProteinID: NP_001041315
RGD: 1308657
Ensembl: ENSRNOG00000015332
UniProt: Q6TUH4
Position
18:1253041..1291956
AA seq 499 aa
MSPTPALFSLPEARTRFTINHSACENVLAIISLAIGGVTESVCTASTPFVLLGDVLDCLP
LDQCDTIFTFVEKNVATWKSNLSGDSYIRLLSACTSWRQQYCLGLVAEYGLDPQHTEDRE
EGMDVEEGEMGDDEAPTTCSIPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEEV
LAVFKSYKLDDTQASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLI
LFQYLKGQVKFKRASDTKPTRVVRKRAAPEDFLGKGPNKKILIGKVLHINLTVYFTMTRE
YMPTLEEFFEEAIEQADPENMVESEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSL
PEYLENMVIKLAKELPPPSEEIKTGEDEDEEDNDALLKENESPDVRRDKPLTGEQIESFA
NKLGEQWKILAPYLEIKDSDIRQIECDSEDMKMRAKQLLVAWQDQEGVHATTDNLIGALN
KSGLSDLAESLTNDTETNS
NT seq 1500 nt   +upstreamnt  +downstreamnt
atgtctccgacgccggcgcttttcagtttgcccgaggcgcggacgcggtttacgataaat
cattcagcatgtgagaacgttttagctattatttctcttgccattgggggagtaacagaa
agtgtctgtactgcgtccacaccatttgtgctattgggagatgtcttggactgccttcct
ttggatcagtgtgacacaatattcacttttgtcgaaaaaaatgttgccacttggaagtca
aacctctcaggagacagctatatcaggctcctgtcagcatgcacttcttggcgtcagcaa
tattgtttgggtttggtagctgaatatgggctggatccccagcatactgaggatagagag
gaagggatggatgtagaagaaggtgaaatgggagatgatgaagcccccacgacttgttct
attccaattgattacaacctgtacagaaaattctggtcacttcaggattacttcaggaac
ccagtacaatgctatgagaagatttcttggaaaacttttctcaagtattctgaagaagtt
ttagctgtctttaaaagttataaattagatgatactcaagcctccaggaagaagatggaa
gaactgaaaacaggaggggagcacgtgtacttcgcaaagttcttaacaagcgagaagttg
atggatttacaactgagtgacagtaactttcgtcgacacatcctgttgcagtatctcatt
ttatttcagtatctcaagggacaggtcaaattcaaaagagcatcagataccaagcccaca
agagtggtacggaagagagcagccccagaagacttcttaggcaaagggcccaataagaaa
atcctgattggaaaagtattacacataaacctcactgtttactttacaatgaccagagaa
tacatgccaactttggaggagttctttgaagaagccattgaacaagcagatcctgaaaac
atggttgaaagtgaatataaagccgtaaataattcaaattatggatggagagctctcaga
ctcttagcccggagaagccctcacttcttccagccaactaaccagcagtttaagagtctg
ccagagtatcttgaaaacatggtgataaagctagccaaggaactaccacccccttctgaa
gaaataaaaacaggtgaggatgaagatgaggaagataatgatgctttactaaaggaaaat
gaaagtcctgatgttcggcgagataaacctctaacaggggaacagatagagtcatttgcc
aacaaacttggtgagcagtggaagattttggctccttacctggaaattaaagactctgac
attaggcagattgaatgtgacagtgaggacatgaagatgagagccaaacagctccttgtt
gcctggcaagatcaagaaggagttcacgcaacaactgataacctgattggtgcactgaac
aagtctgggttaagtgaccttgcagaaagtctaactaatgacactgaaacaaacagttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (27)   

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