KEGG   Rattus norvegicus (rat): 291841
Entry
291841            CDS       T01003                                 
Symbol
Cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    291841 (Cnot1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    291841 (Cnot1)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     291841 (Cnot1)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     291841 (Cnot1)
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT
Other DBs
NCBI-GeneID: 291841
NCBI-ProteinID: NP_001128312
RGD: 1308009
Ensembl: ENSRNOG00000012271
UniProt: A6JXZ2
Position
19:9261290..9352636
AA seq 2376 aa
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSPDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEVFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPAETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNSDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKGLQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq 7131 nt   +upstreamnt  +downstreamnt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtaaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgattcaggagtgtgcctcg
ctgattacaaagccaaattttatctcgacattgtcatatgccattgataatcctttgcac
taccagaagagtttaaaacctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagtaaagtacaagaggtaatttttggtcttgcccttttgaattcttctagcccagat
ctcaggggatttgctgcccagtttattaagcagaagcttccagatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctgcacctcctgctctcccacctcctctttgggcagaagggggcctttggagtcgggcag
gagcagatagacgcctttctcaagacgctgcgcagagattttccccaagagcgttgtcct
gtggtgcttgcaccactcctataccctgaaaaacgggacattctaatggacaggattctg
cctgactctggaggggtagctaagaccatgatggagagctctctggctgatttcatgcaa
gaagtgggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtgacagctgcccaggttgccagggtcttgggaatgatggctcggact
cactcaggattaacagatggtattccattacagagcatctctgctcccggcagtgggatc
tggagtgatgggaaagataaaagcgagggggcacaggcacacacgtggaatgtagaggtt
ttgatcgatgttcttaaagaactgaacccgagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgatagcaaagggcttcacaatgtggtgtatggc
attcagaggggtctgggcatggaagtgttcccagtggactttatatataggccctggaaa
catgcggaaggccagctctccttcatccagcattccctgataaacccagaagtcttctgc
tttgccgactacccctgtcacactgttgccactgatattttgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaaaagcttggatttgattgaatctctgctgaggctt
gcagaggttgggcagtatgagcaagtgaaacaactcttcagcttccctatcaaacactgt
ccagacatgttggtattggccttacttcaaatcaacacctcctggcacaccctacgccat
gaactcatttctactttgatgccaattttccttggaaaccatcctaactctgccattatt
ttgcactatgcatggcatgggcagggacagtctccatcaattcgccaacttataatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggccctgtcgatgctgctgaacggcactccatttgcc
tttgttattgaccttgctgcactcgcttctcggcgtgaatacctcaaacttgacaagtgg
ctaacagataagataagagagcatggggagccttttatacaagcatgtatgactttttta
aaaagaaggtgcccttctattttgggtggacttgccccagagaaagatcagcccaaaagt
gctcaacttcctgctgaaacactagcgacaatgttggcctgtctacaggcttgtgcaggg
agtgtttctcaggagttatccgagactatcctcaccatggtagccaattgcagtaatgta
atgaataaggccagacagccaccacctggagttatgcccaaaggccgccctcctagtgct
agcagcttagatgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagcatgcagggttttcctccaaatttg
ggttctgcgttcagtacacctcagtcaccagcaaaagcatttccaccactttcaacccca
aatcaaacaacggcattcagtggtattgggggactttcatcacagcttccagtaggtggt
cttggcacaggaagcctgactggcataggaactggggcccttggacttcctgcagtgaac
agtgatccttttgtacagaggaaactgggcacctctggactcaaccagcctacattccag
cagagtaagatgaaaccttccgacttgtctcaggtgtggccagaggcaaatcagcacttt
agtaaagaaatagatgacgaagcaaacagctatttccagcgaatatataatcacccccca
catccaaccatgtctgttgatgaggtactagaaatgctacagagatttaaagactctaca
ataaaaagggagcgagaagtatttaactgtatgctaaggaacttatttgaagaataccgg
ttttttccccagtaccctgataaagaattacatataacagcctgcttgtttggtggcata
attgaaaaaggactggtcacttacatggcattgggtctggccctgcgatatgttcttgaa
gccttacggaagccttttgggtccaaaatgtattattttggtattgctgcactagataga
tttaaaaatagattgaaggactatcctcagtattgtcaacacctggcttctatcagtcac
tttatgcagttcccacaccatttgcaggagtacatcgaatatggacaacagtctcgagat
cctcctgtgaaaatgcagggctctatcactacccctggaagtattgcactggctcaggcc
caggcccaggcccaggttccagcaaaagcccctcttgcgggtcaggttaacacaatggtg
accacctcaacaaccaccactgttgctaaaacggttacagtcaccaagccaacaggagtc
agctttaagaaagatgtgccaccttccataaacacaacgaatatcgatacactgcttgtg
gccacagatcaaactgagaggattgtggagcccccagagaatattcaagagaaaattgct
tttattttcaacaatctctcacagtcaaatatgacacaaaaggttgaagagcttaaagaa
actgtgaaggaagaatttatgccttgggtttcccagtatctagttatgaaaagagtcagt
attgagccaaactttcatagcttgtattcaaactttcttgatacattgaagaatcctgaa
tttaacaagatggttctgaatgaaacctacagaaacattaaagtgctgctgacttctgat
aaagctgcggccaatttctcagatcgttctttgctgaagaacttgggacattggttagga
atgatcacattagctaaaaataaacccatcttacacacggacttggatgtgaaatccctt
ctgttagaggcttacgttaaaggacaacaggagctgctttatgtagtgccctttgttgcc
aaagttctagagtccagcattcgtagtctggtttttagaccacccaatccctggacgatg
gccattatgaatgtcttggcagagctgcaccaggagcatgacctgaagttaaacttgaag
tttgagattgaggtgctctgtaagaacctcgcattagacatcaacgagctcaaacctgga
aacctgctgaaagacaaagatcgcctgaagaatttagatgaacagctctctgctccaaag
aaagatgtcaaacagccagaagagcttcctgccatcacaacaacaacgacttctacaaca
ccagctaccagcactacgtgcacagccaccgttccgccacagccgcagtacagctaccat
gacattaatgtctattctctagcaggcctggcacctcacattactctaaaccctacaatc
cctttatttcaggctcatccacagttgaagcagtgtgtgcgacaagcaattgaacgagct
gtccaggagctagtccaccccgtggtggatcggtccattaagattgctatgactacatgt
gaacagatagttagaaaggactttgctctggattctgaagaatctagaatgagaatagca
gctcatcacatgatgcggaacttgacagctggaatggctatgattacttgcagggaacct
ttactgatgagcatatctaccaacctcaaaaacagcttcgcttcagctctccgtactgcg
tccccacaacaaagggagatgatggaccaggccgccgctcagttagctcaggacaattgt
gaattagcttgctgctttattcagaaaactgcagtggagaaagcaggccctgagatggac
aagagattggcaactgaatttgagctgaggaaacacgctcggcaagaaggccgtcggtac
tgtgatcctgttgtgcttacataccaagccgaacggatgcccgagcagatcaggctgaaa
gttggtggtgtggacccaaagcagctagccgtctatgaagagtttgcgcgaaatgtgcct
ggcttcttacctacaaatgacttaagtcagcctacagggtttttagcacagcccatgaag
caagcttgggcaacagatgacgtcgctcagatttatgataagtgtattacagaactggag
cagcacctgcatgccatcccaccaactttggccatgaatccccaagcccaggctctacga
agtctcttagaggttgtagtattgtctcggaattctcgggatgctatagctgctcttgga
ttactacagaaggctgtggagggcctattggatgccacaagtggtgctgacgctgacctg
ctgctgcgctacagggagtgccacctgctggtgctgaaagggctgcaggacggcagggcg
tacgggtctccatggtgcaacaagcagatcacaaggtgcctaatcgaatgccgagatgaa
tacaagtataatgtggaggccgtggagttgttaatccgaaaccatctggtcaacatgcag
cagtatgaccttcatcttgctcagtcgatggagaatggcttaaactacatggccgtggca
tttgctatgcaactggtaaaaattctgctggtggacgaaaggagtgttgcccatattact
gaggcagatctgttccacaccattgaaaccctcatgagaattaatgctcattccagaggc
aatgctccagaaggattgccccagctgatggaagtggtgagatctaactatgaagcaatg
attgatcgtgctcatggaggccctaactttatgatgcattctgggatctctcaagcctca
gaatatgatgaccctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctgtaccattcagcagcagctggccgtgacagtaccaaagcattctctgcgtttgtt
ggacagatgcaccaacaaggaatacttaaaactgatgacctcataacaaggttttttcga
ctttgcactgaaatgtgtgttgaaatcagttaccgtgctcaggcagagcagcagcacaat
cctgctgccaaccccaccatgatccgggccaagtgttaccacaacctggatgcctttgtc
cgcctcattgcactgttagtgaagcactctggggaggccaccaacactgtcacaaagatc
aacctgcttaataaggttctcggtatagtagtgggagttctcctgcaggaccacgatgtc
cggcagagcgagtttcagcagcttccctaccataggattttcatcatgctgctgctggag
ctcaatgcacctgagcacgtgttggagaccatcaatttccagacccttacagctttctgc
aatacattccacatcttgaggcctaccaaagctcctggctttgtatatgcttggcttgaa
ttgatctcgcatcggatctttattgcaagaatgctggcacacacgccacagcagaagggg
tggcctatgtatgcacagctgttgattgatttattcaaatatttagcacctttccttaga
aatgtggaactcactaaacctatgcaaatcctctacaagggtactctgagagtgctgcta
gttcttttgcatgatttcccagagttcctttgtgattaccattatgggttctgtgatgtg
atccctcctaattgtatccagttaagaaatttgatcctgagtgccttcccaagaaatatg
aggctcccagacccattcacgcctaatctgaaggtggacatgctgagcgaaattaacatt
gcacctcggatcctcaccaacttcactggagtgatgccacctcagttcaaaaaagatttg
gattcttatcttaaaactcgatcaccggtcacttttctgtctgatctgcgtagtaaccta
caggtatctaatgaacctgggaatcgctacaacctccagcttatcaatgcattggtgctc
tatgtagggactcaggccatcgcgcacatccacaacaagggcagcacgccttcaatgagc
accatcacccactcagcacacatggacatcttccagaatctggctgtggacctagatacc
gagggccggtatctctttttaaacgcaattgcaaaccagctgcggtacccaaacagccac
acgcactacttcagctgcaccatgctgtacctttttgccgaggcgaacactgaggcaatc
caggaacagatcacaagggttctcttggaacggttgattgtaaataggccgcatccttgg
ggtcttctcatcaccttcattgagctgattaaaaacccagcatttaagttctggaaccat
gaatttgtacactgtgccccagagatcgaaaagctgttccagtctgttgcgcagtgctgc
atgggacagaagcaggctcagcaagtgatggaggggaccggtgccagttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (12)   
   UniProt (1)   
   RefSeq(pep) (11)   
DNA sequence (18)   
   RefSeq(nuc) (12)   
   GenBank (3)   
   EMBL (3)   
Protein domain (5)   
   Pfam (5)   
All databases (45)   

Download RDF
DBGET integrated database retrieval system