KEGG   Rattus norvegicus (rat): 292019
Entry
292019            CDS       T01003                                 
Symbol
Sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
  KO
K12830  splicing factor 3B subunit 3
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    292019 (Sf3b3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    292019 (Sf3b3)
   03041 Spliceosome [BR:rno03041]
    292019 (Sf3b3)
   03036 Chromosome and associated proteins [BR:rno03036]
    292019 (Sf3b3)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     292019 (Sf3b3)
Spliceosome [BR:rno03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    292019 (Sf3b3)
 Complex B
    292019 (Sf3b3)
 Complex C
   U2 SnRNP specific factors
    292019 (Sf3b3)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     292019 (Sf3b3)
    TFTC complex
     292019 (Sf3b3)
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 292019
NCBI-ProteinID: NP_001099657
RGD: 1311636
Ensembl: ENSRNOG00000017724
UniProt: E9PT66 B5DF12
Position
19:complement(55692124..55729640)
AA seq 1217 aa
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
EDWYVLVGVAKDLILSPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq 3654 nt   +upstreamnt  +downstreamnt
atgtttctgtacaacttgaccttacagcgggccactggcatcagctttgccatccatggc
aacttctctggaaccaaacaacaggaaattgtcgtttcccgtgggaagattttggagtta
cttcgcccagatcctaacactggcaaagtgcatacccttctcactgttgaagtttttggt
gttatccggtcacttatggcatttaggctaacaggtggcaccaaagactacattgtagtt
ggcagtgactcaggccgaattgttatcttggaataccagccatcaaagaatatgtttgag
aaaattcaccaagaaactttcggcaaaagtggatgtcgccgtattgttcctggccagttc
ttagccgtggatcccaaaggaagagctgttatgattagtgcgattgagaagcagaaattg
gtgtatatcttgaacagagacgctgcagcccgacttaccatttcatctcccctggaggcc
cacaaagcaaacactctagtgtaccatgtggttggagtagatgtgggatttgaaaatcct
atgtttgcttgtctggaaatggattatgaggaagcagacaatgatccaacaggggaagca
gcagccaatacccagcagacacttactttctatgaattggaccttggtttaaatcacgtg
gttcggaaatacagtgaaccgttggaggaacatggcaacttccttattacagttcctgga
gggtcagatggtccaagtggagtgctgatctgctctgagaattatatcacctacaagaac
tttggtgaccagccagacatccgatgtccaattcccaggagacggaatgacctggatgac
cctgaaagaggaatgatttttgtttgctctgccacccataagaccaagtccatgttcttc
tttttggcccaaacggagcagggagatatctttaagatcactttggagacagatgaagat
atggtaactgagatccgcctcaagtattttgatactgttcctgttgctgctgctatgtgt
gtgcttaaaacaggcttcctttttgtggcatcagaatttggaaatcattacttgtatcaa
attgcccatcttggagatgatgatgaagagcctgagttttcatctgccatgcctttagaa
gaaggagacacattcttctttcagccgagaccactcaaaaatctcgtgctggtggatgaa
ctggacagcctctctcctattctcttttgccagatagctgatttggccaatgaagacact
ccacagctgtatgtagcctgtggtaggggaccccggtcgtctctgagagtcttaagacat
ggacttgaggtgtcggaaatggctgtttctgagctccctggtaaccccaatgctgtctgg
actgtccgtcggcacattgaagatgagtttgatgcctacatcattgtgtctttcgtgaat
gccacgctggtgctgtccatcggagagactgtggaagaagtgacagactccgggttcttg
ggtaccactccaaccttgtcctgttccttattgggagatgacgcgttggtgcaggtgtat
ccagatggcattcgacacatccgagcagacaagagagtcaatgagtggaagactcctggc
aagaagacaattgtgaagtgtgcagtgaaccagcgacaagtggtgatcgccttgactggg
ggagagctggtctatttcgagatggatccttcaggacagttgaatgagtacacggagcgg
aaagaaatgtcagcagatgtggtgtgcatgagtctggccaacgtaccccctggagaacag
cggtctcggttcctggctgtggggctggtggacaacactgtcagaatcatctcccttgac
ccatcagactgtttgcagcctctgagtatgcaggctctcccagcccagcctgagtctctg
tgtattgtggaaatgggtgggaccgagaaacaagatgagctgggtgagaggggctctatc
ggcttcctgtacctgaacattggactccagaacggtgtgctgctgaggactgtcctagac
cctgttactggggacctgtctgacacccgcactaggtatctggggtcccgtcctgtgaag
ctctttcgggttcggatgcaaggccaggaggctgttctggctatgtctagtcgctcatgg
ctgagctactcttaccagtctcgattccatctcacccctctgtcttatgagaccctggaa
tttgcatcgggctttgcctctgaacagtgtcctgaaggcatcgttgccatctccaccaac
actttgaggattttggcactagagaagcttggcgctgtcttcaatcaagtggcctttcct
ttgcagtacacacccaggaagtttgtcatccaccctgagagtaacaaccttatcatcata
gagacggatcacaatgcctacactgaggctacaaaagctcagagaaagcagcagatggct
gaggaaatggtagaagcagcaggggaggatgaacgggagctggctgcagagatggcagcc
gcgttcctcaatgaaaacctcccagaatccattttcggagctcccaaggctggcaatggg
cagtgggcctctgtgattcgggtaatgaaccctatccaggggaatacactagaccttgtc
cagctggagcagaatgaggcagcctttagtgtggcagtgtgtaggttctccaacactggt
gaagactggtatgtgctggttggtgttgctaaggacttgatcctgagccctcggtctgtg
gcagggggctttgtgtatacatacaagcttgtgaacaatggggaaaagttggagtttttg
cacaagactccagtggaagaagtccctgctgccattgccccattccaggggagggtactg
attggtgtggggaaacttttacgagtctatgacctggggaagaagaagttacttcgaaag
tgtgagaataagcatattgccaactacatatcagggatccagacaattggtcacagggta
atcgtgtctgatgtccaggaaagtttcatctgggttcgctacaagcgtaatgagaaccag
ctcattatctttgctgatgacacctatcccagatgggtcaccactgccagccttctcgac
tatgatactgtggctggggcagacaagtttggcaacatttgtgtggtgaggctcccacct
aacaccaacgatgaggtggatgaagatcccactggaaacaaagccctgtgggaccggggc
ttgctcaatggggcttcacagaaggcagaggtcatcatgaactaccacgttggggagaca
gtgctgtcgttgcagaagaccacactgatccctggaggctcagaatcacttgtctatacc
actttatctggaggaattggcatccttgtccctttcacgtctcatgaggaccacgacttt
ttccagcatgttgagatgcacctgcggtctgagcatcctcctctctgtggacgggaccac
ctcagctttcgttcttattatttccctgttaagaatgtgattgatggagacctttgtgag
cagttcaactccatggagcccaacaagcagaaaaatgtctctgaagagctggaccgaacc
ccacctgaagtgtccaagaagcttgaggatattcggacccgctatgctttctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (5)   
   UniProt (2)   
   RefSeq(pep) (3)   
DNA sequence (15)   
   RefSeq(nuc) (3)   
   GenBank (6)   
   EMBL (6)   
Protein domain (2)   
   Pfam (2)   
All databases (34)   

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