KEGG   Rattus norvegicus (rat): 292028
Entry
292028            CDS       T01003                                 
Symbol
Kars1
Name
(RefSeq) lysine--tRNA ligase isoform 1
  KO
K04567  lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno00970  Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    292028 (Kars1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01007 Amino acid related enzymes [BR:rno01007]
    292028 (Kars1)
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rno03016]
    292028 (Kars1)
Enzymes [BR:rno01000]
 6. Ligases
  6.1  Forming carbon-oxygen bonds
   6.1.1  Ligases forming aminoacyl-tRNA and related compounds
    6.1.1.6  lysine---tRNA ligase
     292028 (Kars1)
Amino acid related enzymes [BR:rno01007]
 Aminoacyl-tRNA synthetase
  Class II (A)
   292028 (Kars1)
Transfer RNA biogenesis [BR:rno03016]
 Eukaryotic type
  Aminoacyl-tRNA synthetases (AARSs)
   Multi-aminoacyl-tRNA synthetase complex (MSC)
    292028 (Kars1)
 Prokaryotic type
   Other AARSs
    292028 (Kars1)
SSDB
Motif
Pfam: tRNA-synt_2 tRNA_anti-codon tRNA-synt_2d
Other DBs
NCBI-GeneID: 292028
NCBI-ProteinID: NP_001006968
RGD: 1359653
Ensembl: ENSRNOG00000019456
UniProt: Q5XIM7
Position
19:complement(56867096..56886151)
AA seq 626 aa
MLMQAAVRLVRGSLRQTSWAEWGQRELRLGQLAPFTTLRKDKPLSDRRSELKRRLKAEKK
LAEKEAKQKELSEKQLNQTTAAAATNHTADNGVGAEEETLDPNQYYKIRSQAVQQLKVSG
EDPYPHKFHVDISLTQFIQEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEG
VKLQVMANSRNYKSEEEFVHINNKLRRGDIIGVEGNPGKTKKGELSIVPREMTLLSPCLH
MLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMM
NIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTH
NPEFTTCEFYMAYADYHDLMEITEKMLSGMVRSITGSYKITYHPDGPEGQAYEIDFTPPF
RRISMVEELEKVLGVKLPETSLFETEETRKILDDICVARAVECPPPRTTARLLDKLVGEF
LEVTCISPTFICDHPQIMSPLAKWHRCKEGLTERFELFVMKKEICNAYTELNDPVRQRQL
FEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFP
AMKPEDKKETATATETPESTEASPSV
NT seq 1881 nt   +upstreamnt  +downstreamnt
atgttgatgcaagctgctgtcaggcttgttagggggtccctgcgccaaacctcatgggca
gaatggggtcagagggaacttcgactgggccaacttgctcctttcacaacgctccgcaag
gacaagccactttctgatagaagaagtgagctgaagaggcgtctgaaagctgagaagaag
ctggcagagaaagaggccaagcagaaagagctcagtgaaaagcagctaaaccagacgact
gctgctgctgccaccaaccatactgctgacaatggtgtgggtgctgaagaggagaccctg
gacccaaaccaatactacaagatccgtagtcaagctgtccagcagctgaaggtcagtggg
gaggacccgtacccacacaagttccatgtggacatctcactcactcagttcatccaagaa
tacagtcacctgcagcctggggaccacctgactgacatcaccttaaaagtagcaggtcgc
atccacgccaagagagcctctgggggaaagctcatcttctatgaccttcgaggagagggg
gtcaagttacaagtcatggccaactccaggaattataaatcagaggaagaattcgttcac
atcaataacaaactgcgcaggggagacataatcggagtcgagggcaatcccggaaaaacc
aagaagggtgagctgagcatcgtcccccgggagatgacactcctgtccccctgcttgcac
atgctgcctcatcttcacttcggcctcaaggacaaggaaacaaggtatcgtcagagatac
ttggacttgatactgaacgactttgtgaggcagaagtttatcatccgctctaagatcatc
acatatataagaagtttcttggacgagctgggattcctagagatcgagactcccatgatg
aacatcatccccgggggagctgtggccaagcctttcatcacctaccacaacgagctggac
atgaacctgtacatgagaattgctccagagctctaccacaagatgctggtggttggtggc
attgaccgggtttatgaaattgggcgccagttccggaacgaagggattgatttgactcac
aatcctgagttcaccacctgtgagttctacatggcctatgcagactatcatgacctcatg
gaaatcacagagaagatgctgtcagggatggtgagaagcatcacaggcagttacaagatc
acctatcacccagatgggccagaaggccaagcctatgagattgacttcaccccacccttc
cgaagaatcagcatggtagaagagcttgagaaggttctgggcgtgaagctgccagaaacc
agtctctttgagaccgaagaaactcgcaaaattctcgatgatatttgtgttgcaagggct
gttgaatgccccccacctcggaccacagccaggctccttgataagcttgtgggagagttc
ctcgaagtgacatgcatcagccctacattcatctgtgatcacccacagatcatgagtcct
ctggccaaatggcaccgttgcaaagagggtctaactgagcgcttcgagctgtttgtcatg
aagaaggaaatatgcaatgcgtacactgagctgaacgaccccgtgcggcagagacaactg
tttgaagaacaggccaaggccaaggctgctggtgacgatgaggccatgttcatagatgag
aacttctgtactgccctggagtacgggctgcccccaacagctggctggggcatgggtatc
gaccgagtcaccatgtttctcacagactccaacaatatcaaggaagtacttctctttcct
gccatgaagcctgaagacaagaaggaaactgcaacagccaccgagaccccagaaagcaca
gaggccagcccctctgtctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (4)   
DNA sequence (8)   
   RefSeq(nuc) (4)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (37)   

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