KEGG   Rattus norvegicus (rat): 292206
Entry
292206            CDS       T01003                                 
Symbol
Trip13
Name
(RefSeq) pachytene checkpoint protein 2 homolog
  KO
K22399  pachytene checkpoint protein 2
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04110  Cell cycle
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    292206 (Trip13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    292206 (Trip13)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Centromeric chromatin formation proteins
   SAC (spindle assembly checkpoint) factors
    Others
     292206 (Trip13)
SSDB
Motif
Pfam: AAA AAA_22 AAA_16 nSTAND3 AAA_18 AAA_14 Viral_helicase1 AAA_25 AAA_33 AAA_5 AAA_28 ATPase_2 RuvB_N Cytidylate_kin AAA_24 RNA_helicase TsaE DUF815 TIP49 NACHT AAA_17 AAA_30 AAA_11 IstB_IS21 AAA_7 bpMoxR ATPase ABC_tran Mg_chelatase PduV-EutP AAA_19 Rad17 PhoH nSTAND1 SLFN-g3_helicase NB-ARC DUF6707 AAA_3
Other DBs
NCBI-GeneID: 292206
NCBI-ProteinID: NP_001011930
RGD: 1308516
Ensembl: ENSRNOG00000015810
UniProt: Q5XHZ9 A6JUW1
Position
1:31185700..31230638
AA seq 432 aa
MDDAVGDLKQALPCVAESPAVHVEVLQRSGSTAKKEDIKQSVYRLLKRHNIVFGDYVWTE
FDEPFLTRNVQSVSIVDTELKAKDPQPIDLSACTIALHIFQLNEEGPSSENLDEETENII
AASHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVDSNLITWNRVVLLHGP
PGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLI
DDKEALVFVLIDEVESLTAARNACRAGAEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSN
ITEKIDVAFVDRADIKQYIGPPSAAAIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIG
FIENNVSKLSLLLSEISRKSEGLSGRVLRKLPFLAHALYIQAPSVTIEGFLQALSLAVDK
QFEEKKKLSAHV
NT seq 1299 nt   +upstreamnt  +downstreamnt
atggacgacgcggtgggcgacctgaagcaagcgcttccgtgtgttgccgagtcgcccgcg
gtccatgtggaggttttgcagcgcagcggaagcactgcaaaaaaagaagatataaagcag
agcgtttacaggctgctcaagaggcataacattgtgtttggagattacgtgtggactgag
tttgatgagccttttctaactagaaatgttcagtcggtatctattgttgacacagaatta
aaggctaaagaccctcagcccattgatctgagtgcatgcaccattgcacttcacatcttc
cagctgaatgaagaaggccccagcagtgaaaatttggatgaagaaacagaaaatataatt
gcagcaagtcactgggttttgcctgcagctgaatttcatgggctttgggatagcctcgtg
tatgatgtggaggtcaaatcacatctccttgactatgtgatgaccaccttactattctca
gacaagaatgtggacagcaaccttatcacctggaaccgggtggtactgctgcacggtcct
ccgggtactggaaagacatccctttgtaaggcattagcccagaaactgaccatcagactg
tcaagcaggtaccggtatggccagttaattgaaataaacagccacagcctattttctaag
tggttttcagaaagtggcaagttggtaactaagatgttccagaagattcaggacttgatt
gatgataaagaagctttggtgtttgttctgattgatgaggtggagagtcttacagctgct
cgaaatgcttgcagggcaggcgcagagccatcagatgctatccgtgtagtcaatgctgtg
ttgactcagattgatcagattaaaaggcattccaatgtggtgattctgaccacttccaac
atcactgagaagattgatgtggcctttgtggatagagctgacatcaaacaatatattggc
cccccctctgcagcagccatcttcaaaatctacctgtcttgtttagaagaactgatgaag
tgccagatcatatatccccgtcagcagctgttgacccttcgagagctggaaatgattggc
ttcattgaaaataatgtgtcgaagttgagcctccttttgagtgaaatttcaaggaagagt
gagggcctcagcggccgggtcttgaggaaacttcctttcctggctcatgcgctgtatatc
caggctcccagcgtcaccatcgagggtttcctccaggccctgtcactggcagtggacaaa
cagtttgaggagaaaaagaaactctcagctcatgtttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (38)   
   Pfam (38)   
All databases (59)   

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