KEGG   Rattus norvegicus (rat): 292295
Entry
292295            CDS       T01003                                 
Symbol
Pabpc6
Name
(RefSeq) poly(A) binding protein, cytoplasmic 6
  KO
K13126  polyadenylate-binding protein
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    292295 (Pabpc6)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    292295 (Pabpc6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    292295 (Pabpc6)
   03041 Spliceosome [BR:rno03041]
    292295 (Pabpc6)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     292295 (Pabpc6)
   mRNA cycle factors
    Stress granule specific factors
     292295 (Pabpc6)
Spliceosome [BR:rno03041]
 Complex C
  Other components
   Complex C specific factors
    292295 (Pabpc6)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_3 RRM_occluded YflT HATPase_c
Other DBs
NCBI-GeneID: 292295
NCBI-ProteinID: NP_001099678
RGD: 1311201
Ensembl: ENSRNOG00000017367
UniProt: F7FIM0 B5DF80
Position
1:53592902..53595978
AA seq 643 aa
MNPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQ
QLEDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQ
AELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFER
HEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVR
CQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAV
TEMNGRIVATKPLYVALAQRKEERQAHLSNQYMQRMASTSAVPNPGINPFQPAQGLSGYF
MTATAPTQNRGTYYAPNQTTQQGPSARGSAQGTRAHPFQNMSSAIHPSNTMPSFSTSGPT
SSQAVRHRTASTSTQMMGPHPAAASTAAAPAARTVTQYKYTAGVRNPPQHLNTQPQVTTQ
RSAVSAQGKESLTVSMLASAPPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNLEL
RHMLESPECLHTKVDEAIAVLQAHQAKETSQKAVSSVAGVPTS
NT seq 1932 nt   +upstreamnt  +downstreamnt
atgaaccccagcgaccccagctactccttggcttcactctatgtgggggacctgcacccc
gacgtgaccgaggcgatgctctacgagaaattcagcccggcagggcccatcctctccatc
cgggtgtacagggacagaaccacccgccgctcgctgggctacgcgtctgtaaacttccag
cagctggaggatgccgagcgggccttggacaccatgaatttcgatgtgataaagggcaag
ccggttcgcatcatgtggtctcagcgggacccatcgctgcgcaagagtggggtaggcaac
atattcgtcaaaaatctggacagatccattgacagtaaaacgctgtatgatacgttttct
gccttcggtaacatcctttcctgtaaggtggtgtgtgatgagaatggttccaagggttat
ggattcgtacacttcgagacacaggaagaagccgaacgagcaattgagaaaatgaacggg
atgttcctaaatgaccgcaaagtgttcgttgggcgctttaagtctcgtagagaccggcag
gctgaacttggagccagggccaaggagttcaccaacgtttacatcaagaatttgggagaa
gacatggatgatgaaagactccaggatctcttcagcagatttgggcctgccttaagtgtt
aaagtcatgactgatgaaagtggaaagtccaaaggattcggatttgtaagctttgaaagg
catgaagatgcacgaaaggcagtggatgaaatgaacggaaaagacctcaatggaaaacaa
atttatgtaggtcgagctcagaaaaaggtggaacgacagactgaactgaagcacaaattc
gggcagatgaagcaagataagcccaaaattgaacaggtaccacaagatagaagcgtcaga
tgccaaggtgttaacctttacgtgaaaaacctcgatgatggtattgatgacgagcgtctc
cggaaggagttttctccgtttgggactatcactagtgcaaaggtaacgatggagggtggg
cgcagcaaaggatttggttttgtatgtttctcctctccagaagaagccaccaaagccgtt
acagaaatgaatggcagaatagtggcaaccaaaccactgtacgtagctttagctcaacgc
aaagaggagcgccaggctcacctcagtaaccagtacatgcagagaatggcaagcaccagt
gccgtgcccaacccaggcatcaaccctttccagccagcacagggtctttcaggatacttc
atgacagctacagcaccgactcagaaccgtgggacatactatgctcctaaccaaactact
cagcaaggaccaagtgcccgtgggagtgctcagggtaccagagcgcatccattccaaaac
atgtctagtgccatccacccatctaatactatgccatcatttagtacttcaggacccact
tcctcacaggctgtacgacaccgtactgccagcacatccacacagatgatgggtccacat
cctgcagctgcttctactgcagctgctcctgccgcccgcacagttactcagtataaatat
actgctggagtccgaaatccccctcagcatcttaatacacagccacaggtcaccacgcag
cggtctgctgtttctgcccaaggtaaagaatctttgactgtctccatgttggcatctgct
cctcctcaagctcaaaagcaaatgttaggggaatggctattttctcttattcaggccatg
caccctgcccttgccggtaaaatcaccggtatgctgttggaaattgataatttagagcta
cgccacatgcttgagtctccagagtgtctccacaccaaagtcgatgaagccatagctgta
ctgcaagcccaccaagctaaagagacttcccagaaagcagtcagcagtgttgctggtgtc
ccaacttcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (25)   

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