KEGG   Rattus norvegicus (rat): 292683
Entry
292683            CDS       T01003                                 
Symbol
Sympk
Name
(RefSeq) symplekin
  KO
K06100  symplekin
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
rno04530  Tight junction
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    292683 (Sympk)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    292683 (Sympk)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    292683 (Sympk)
   03019 Messenger RNA biogenesis [BR:rno03019]
    292683 (Sympk)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     292683 (Sympk)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     292683 (Sympk)
    U7-dependent histone pre-mRNA processing factors
     292683 (Sympk)
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N PDS5 Cnd1 Cohesin_HEAT
Other DBs
NCBI-GeneID: 292683
NCBI-ProteinID: NP_001402715
RGD: 1306735
Ensembl: ENSRNOG00000014353
Position
1:87800416..87828727
AA seq 1280 aa
MASGSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSTEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVISDLQEACWDMVSSMAAEIILLLDSDNDGIR
THAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDSRKRPRDDTESTLKKM
KLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPETMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLSVQGQAISVVGSQSTMSPLEEEVPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGF
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGPSGTLDKYEDCLICLLSGLQEKPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRAYLGMSTLGDLIFKRPSRQFQYLHVLLDL
SSHEKDRVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
ARLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMTILEASGKQEPEVKEAPSGSLEEDDLEPLALALAPALAPAPAPRP
PQDLIGLRLAQEKALKRQLEEEQKQKPTGVGAPTSSVSSTPLVGPAARAGPTPAEEVMEY
REEGPECETPAIFISMDDDSGLAETTLLDSSLEGPLPKEAAAVGPSSKDERSPQNLSHAV
EEALKTSSPEAREPESKGNS
NT seq 3843 nt   +upstreamnt  +downstreamnt
atggcaagcggcagcggggacagtgtcacccgccggagtgtggcatcacagtttttcaca
caagaagaagggccaggcattgatggcatgaccacttctgaaagggtggtagatctcctg
aaccaggctgcgctgatcaccaatgactcaaagatcacagtgctcaaacaggtccaagag
ctgatcatcaacaaggaccccaccctgcttgacaacttcctggacgagatcatcgctttc
caagcagacaagtccactgaagtgcgcaagtttgtcattggcttcatcgaggaggcatgc
aagcgggacattgagctgctgctaaaactgatcgccaacctcaacatgctattgcgggat
gaaaacgtgaatgtggtaaagaaggccatcctcaccatgacccagctctacaaggtggcc
ctgcagtggatggtgaagtctcgggtcatcagcgacctccaggaggcctgctgggacatg
gtgtcctccatggctgcagaaatcatactgctcttggattctgacaatgatggcatccgt
acacatgccattaagtttgtggagggcctcattgtcactctgtcaccccgaatggctgac
tcagaggtcccccgacgccaggagcatgacatcagtctggaccgcatccctcgagatcac
ccctacatccagtacaatgtcctatgggaagaaggcaaggcagctctggagcagcttctc
aagttcatggtgcaccccgccatctcctccatcaacctgaccacagcgctcggctccctt
gccaacatcgcccgccagagacccatgttcatgtctgaggtgatccaggcctatgagact
ctgcatgccaacctgcccccaacactggccaagtcccaggtgagcagcgtgcgtaagaac
ctcaagctgcacttgctgagcgtgctcaagcaccctgcctccttggagttccaggcccag
atcaccaccctgctggtggacctgggcacgccccaggccgagattgcccgtaacatgcct
agcagcaaggactcccgcaagcggccccgggacgatacagaatccacgctcaagaagatg
aagctggagcccaacctgggagaagatgatgaggacaaagacttggagcctggcccatcg
gggacatcaaaggcctcagcccagatctcaggccagtcagacacagacatcactgctgag
ttcttgcagcctctgctgacacctgacaatgtggccaatctggtcctcatcagcatggtg
tacctgcccgagaccatgcctgcctccttccaagccatttacacccccgtggagtcagca
ggcacagaagcccagatcaagcacctggcacggctcatggccacacagatgacagctgcg
ggactgggtcctggtgtggaacagacgaaacagtgcaaggaggagcccaaggaggagaag
gtggtaaagccggagagcgtcctgatcaaacggcgcctgtcagtgcagggccaggccatc
tctgtggtgggctctcagagcaccatgtcccccttggaggaggaagtaccccaggccaag
aggaggccagaacccatcattcctgtcacacagccacggctggcaggcgctggtgggcgc
aagaagatcttccgtctgagcgatgtgctgaagcccctgacagatgcccaggtggaagcc
atgaagctgggagctgtgaagcggatcctgagggctgagaaggctgtagcctgcagtggg
gcggcccaggtgcgcatcaagatcctggccagcctcgtgacacagttcgactccggattc
aaggcagaggtgctgtcctttatcctggaagacgtccgggcccgtctggacctggctttt
gcctggctctaccaggagtacaatgcctacctggcagcggggccctctggcactctggac
aagtatgaagactgccttatctgcctgctctctggacttcaagagaaaccagaccagaaa
gatgggatctttaccaaggtggttttggaggccccgctgatcactgagagtgctttggag
gtgatacggaagtactgtgaggatgagagtcgcgcctacctgggcatgtcgacacttgga
gacctgatcttcaagcgcccttctcgccaattccagtatctgcacgttctcctcgacctc
agctctcacgagaaggacagggtgcgctcccaggccctgctcttcattaagcgcatgtat
gagaaggagcagcttcgagaatatgtggagaaatttgccctcaactacctgcagctcctg
gtccaccccaacccaccctcagtgctgtttggagctgacaaggacacagaggtggctgcg
ccctggacagaggaaacagtgaagcagtgtttgtacctatatctggctctcctgcctcag
aaccacaagctgatccatgagctggcagcagtgtacacggaggccatcgccgacatcaag
cggacagtgctgagagtcattgagcaaccgatccgagggatgggcatgaactcaccagag
ttgctgctgctggtggaaaactgtcccaagggggcagagacgctggtcacccgctgcctg
cacagcctcactgacaaagtgccaccatccccagaactggtgaagcgggtccgggacctg
taccacaagcggctgcctgacgtgcgcttcctcatccctgtgctcaacggcttggagaag
aaagaggtgatccaggccctgcctaagctcatcaaactcaaccccattgtggtgaaggag
gtcttcaaccgcctgctaggcacccagcatggtgaggggaactctgccctgtcccccctg
aatccgggagagctgctgattgcattgcacaatattgactctgtaaagtgtgacatgaag
tccatcatcaaagccaccaacctgtgttttgcggagcggaatgtgtacacatcggaagtg
ctggctgtggtgatgcagcagctgatggagcaaagccctctgcccatgctgctcatgcgg
accgtcatccagtccctgaccatgtacccccgcctggggggcttcgtcatgaacatcctg
gcccggctcatcatgaagcaggtatggaagtaccccaaggtatgggagggcttcatcaag
tgctgccagcgcaccaagccccagagtttccaggtcatcctgcagctacctccacagcag
cttggcgcagtctttgacaagtgccctgagctccgggagccactgttggcccatgtgcgc
tccttcaccccccaccagcaagcacacatccccaactccatcatgacaatcctggaggcc
agtggcaagcaggagccggaagtcaaggaagcaccttcagggtccctggaagaggatgac
ctggagcccttggctctggccttggccccggctttggccccggcccctgccccacggccc
cctcaggacctcatcggccttcgattggctcaggagaaggccttgaagcggcagctcgaa
gaagaacagaagcagaagcccacaggcgtcggagcgcccacttcctcagtgtcctcgaca
cccttggtggggccagcagcccgagctggtcccaccccggctgaggaggttatggaatac
cgggaggaaggtcctgaatgcgagaccccggccatcttcatcagcatggacgacgactca
gggctggccgaaaccacacttctggactctagtctcgagggacccctgcctaaggaggca
gcagcagtcggaccgagctccaaggacgagcggagcccccagaacctcagccatgctgtg
gaagaagccttgaagacctccagcccagaggccagggaacccgagagcaaggggaacagc
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (22)   

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