KEGG   Rattus norvegicus (rat): 293184
Entry
293184            CDS       T01003                                 
Symbol
Ctr9
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
  KO
K15176  RNA polymerase-associated protein CTR9
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    293184 (Ctr9)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    PAF1 complex
     293184 (Ctr9)
SSDB
Motif
Pfam: TPR_1 TPR_19 TPR_2 TPR_14 TPR_8 TPR_16 TPR_12 TPR_17 TPR_10 TPR_6 TPR_11 TPR_7 TPR_9 TPPII_C ANAPC3
Other DBs
NCBI-GeneID: 293184
NCBI-ProteinID: NP_001094131
RGD: 1311097
Ensembl: ENSRNOG00000017195
UniProt: G3V897 A6I832
Position
1:174571952..174601974
AA seq 1173 aa
MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEEF
VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKDLITQATLLYTMA
DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYR
GALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAV
LELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENA
SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR
AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPATQSD
TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDAKNLYAANGIGAVLAHK
GYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVV
LYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVL
NAVKELELAHRYFSYLSKVGDKMRFDLALAASEARQCSDLLSQAQYHVARARKQDEEERE
LRAKQEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQRAQYVEKTKNILMFTGETEATKE
KKRGGGGGRRSKKGGEFDEFVNDDTDDDLPISKKKKKRKGSGSEQEGEEEEGGERKKKRR
RRPPKGEEGSDDDETENGPKPKKRRPPRAEKKKAPKPERLPPSMKGKIKSKAIISSSDDS
SDEDKLKIADEGHPRNSNSDSDDDERPNRRASSESDSDDNQNKSGSEAGSPRRSGRQESD
EDSDSDQPSRKRRRSGSEQSDNESAQSGRSPSGGSENENDSRPVSPSAESDHESEQGSDN
EGSGQGSGNESEPEGSNNEASDRGSEHGSDDSD
NT seq 3522 nt   +upstreamnt  +downstreamnt
atgtcgcggggttccatcgagattcccctccgggatactgacgaggtcattgaacttgac
ttcgatcagttaccggagggggatgaagttatcagtattctgaagcaggagcacacacaa
ctgcacatatggattgctttggcgctggagtactacaagcaagggaaaacagaagagttt
gtgaagctgctggaggctgcacggatagatggcaatttggactatcgagaccacgagaaa
gaccagatgacttgcttggatacattggcagcctactatgtacaacaggctcggaaagaa
aagaacaaagacaataagaaagaccttattacgcaggcaactttgttgtatacaatggct
gataaaattattatgtatgatcagaaccatttgttgggaagagcctgcttctgcctgctc
gagggtgacaaaatggaccaagctgacgcacagtttcattttgtacttaaccagtctcca
aacaatattccagcccttcttgggaaagcttgtatctcattcaacaagaaggactacaga
ggagcccttgcttactataaaaaagcattgcgcactaacccaggatgtccagctgaagtt
cgtctaggaatgggccattgctttgtcaaactgaacaaactggaaaaagcccgactagca
ttcagcagagccctggaactcaactctaagtgtgtgggagcactggtcggactggctgtt
ctagaactcaacaataaagaggctgattccatcaaaaatggtgtgcagcttctttccaga
gcctacactattgatcctagcaaccctatggtactgaaccatttggcaaaccactttttc
ttcaagaaggattatagtaaagtgcagcacctggctctccacgcgttccacaacacagag
gtggaggccatgcaagcagagagctgttaccagctggctcggtccttccatgttcaggaa
gattatgaccaggcctttcagtactactatcaagccacacagtttgcttcatcttctttt
gtcctaccattttttggtttgggacaaatgtatatttatcgaggtgacaaagaaaatgca
tctcagtgtttcgagaaagttttgaaagcttatccgaacaattatgaaactatgaaaatt
cttggctctctctatgctgcttcagaagatcaggagaaaagagacatagccaagggccat
ttgaagaaggttacagaacagtatcctgatgacgtggaagcttggattgagttggcccag
atcttagaacagactgacatacagggtgccctttcagcctatggaacggcaacacgaatc
ctgcaggagaaggtgcaggccgatgtcccgcctgagattttgaataatgttggggccctc
cattttagacttggaaacctaggcgaagcaaagaagtacttcctggcctcactggaccga
gcaaaggcagaggcggagcatgatgaacactattacaatgccatctctgtcaccacatcc
tacaatttagccaggctctacgaggccatgtgtgaatttcatgaagcagagaaactgtac
aaaaacattttacgagagcatcctaactatgttgattgctatctgcgcctaggagccatg
gccagagataaaggaaacttctatgaagcttcagattggtttaaggaagcccttcagatc
aatcaggaccatcccgatgcctggtctttgattggtaacctccatctggcaaaacaagag
tggggcccaggtcagaagaagtttgagaggatcttaaaacagccagccacacagagtgac
acctactctatgctggcccttggcaatgtgtggctccagactttgcatcagccaacccga
gaccgagaaaaggaaaagcgccatcaagaccgtgcgctggccatctacaaacaagtcctg
agaaatgatgccaagaacctgtatgctgccaatggcataggagctgtcttggcccacaaa
ggatatttccgtgaagctcgtgatgtgttcgcccaagtgagagaagcaacagcagatatc
agtgacgtgtggctgaacttagcacacatctacgtcgagcagaagcagtatatcagcgcc
gttcagatgtatgagaactgcctccgaaagttctataagcaccaaaacactgaagttgtg
ctctacctggcccgtgccctcttcaagtgtggcaagttgcaggagtgcaagcagactctg
ctgaaggcccgacacgtggcacccagcgacacagttctgatgtttaatgtggccttggtc
ttgcaaagattagctacctctgtcctgaaagatgaaaaaagtaatttgaaggaagtcctt
aatgctgtgaaagagctggagcttgcacacagatacttcagttacttgagtaaagttgga
gataagatgagatttgatttggcccttgctgcctctgaagccaggcagtgctctgactta
ctgagccaggcccaataccatgtggctcgggcacgcaagcaggatgaggaggaacgggag
ctgcgggccaagcaggagcaggagaaggagctcctaagacagaagcttctcaaagagcag
gaagaaaaacgtctcagagaaaaggaagagcaaaagaaacttttggaacagcgggcccag
tatgtggagaagaccaaaaatatcctcatgttcactggcgagactgaagcaacaaaagag
aagaaaagaggtggaggtggagggcggcgttccaagaaaggaggcgagtttgatgagttt
gtcaacgatgacactgatgacgacctccctatatccaagaagaagaagaaaaggaagggc
agtggcagtgaacaggaaggcgaagaggaggaaggtggagagaggaagaagaagaggagg
agaagacctccaaagggagaagaaggatctgatgatgatgaaacagaaaatggccccaaa
ccaaagaagcgccgtccaccgagagcagagaaaaagaaggctcccaagccagaacgcctg
cctccttcaatgaaaggaaaaataaaatccaaagccattatatcatcaagcgatgattct
tcagatgaggataaactgaaaattgctgatgaaggacatcccaggaacagcaacagcgac
tctgatgatgacgagaggcccaacagacgcgcctcatcggagagcgactcagatgacaac
cagaacaagtctggcagcgaggcgggtagcccccggaggtctggtaggcaggagtccgat
gaggattccgacagtgaccagccgtccagaaagagaaggcgctccggctctgagcagtcg
gacaatgagtctgcgcagtccgggaggagcccctccggaggctcagagaatgagaacgat
tctcgcccggtttctccaagtgcagagtcggaccacgaatcagagcagggctctgacaac
gaaggttctggccaaggctctggaaatgaatcggaaccagagggctcaaacaatgaggcc
tcagaccgaggctcagaacatggatcagatgatagcgactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (15)   
   Pfam (15)   
All databases (30)   

Download RDF
DBGET integrated database retrieval system