KEGG   Rattus norvegicus (rat): 293452
Entry
293452            CDS       T01003                                 
Symbol
Palb2
Name
(RefSeq) partner and localizer of BRCA2
  KO
K10897  partner and localizer of BRCA2
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03440  Homologous recombination
rno03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    293452 (Palb2)
   03460 Fanconi anemia pathway
    293452 (Palb2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rno03400]
    293452 (Palb2)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA complex
     293452 (Palb2)
   FA (Fanconi anemia) pathway
    Downstream FA components
     293452 (Palb2)
SSDB
Motif
Pfam: PALB2_WD40
Other DBs
NCBI-GeneID: 293452
NCBI-ProteinID: NP_001178532
RGD: 1304759
Ensembl: ENSRNOG00000025126
UniProt: D3ZM14
Position
1:complement(186096312..186120284)
AA seq 1110 aa
MEELSGKPLSCAEKEKLKEKLAFLRKEYTKTLARLQRAKRAEKVKNSKKAIEDCVPQQEI
SPQLSRSEPINKGFPCDASLQSDHLDEETGENISQILDGDPQSFNCESGQEVLHTPRAGD
IQGQFLHSTSSPDGKKGQSAFPGTTKKLRKRSSVLQEKDDFFDTSSLVLPGRHQKRQETV
SSKNPRAPEIEKTHLLCLKSQTPDPPALVTEIDGGGRLIVPSGKSERGIDTPVRGNNVSR
ETTVPSCTASDSNHSGHLELTPPNSGCKITTQGPASSINLVAQDKKTTIFTDNPVVYKPV
SAGSQLPGSPNSCSVNDLTHSNLPANTTPNSRSLKSPDNIVDGRNENLEEDEIVGLSENL
SPAAVSPPSTESQIHSCTMLEGLLFPAEYYVRTTRRMSDCQRKIALEAVIQSHLGVKKKE
RKKKNKATKNLVLSSEETDQSESGMLDTSIGHSSSESLSQKLISPVEVSSPLGPANNRSK
KATARPPGRGHREKRTSACTSTLGHHQLLFPPCAALAVNRTRGKFTKHKCQNRDVIIHDF
ELPDEDFGPLKLEKLKSYSEKLIESPDSKNCGESLPTEGKHAVLEELQIDSETEGLEVEL
TVLPGEACHPGPTLRWQPVSKGLSSSIVLFTPTDTAAPNNSDRSTASLCSPAFPVLGRTP
AFGSQATGENISAEAGQPCSTSRPSHLGETNSLVNKNKQCDSSACSPKLDTSLQVSGRQG
QATCDSDSGPQATPLPIESFTFREDQLCGSACLELHEHSTEQTEIADLPACDSLSPGNLQ
LVSELKNPSSSCSVDVSAMWWERAGTKEPCIITACEDVVSLWKPLDSMQWEKVHTWHFTE
VPVLQIVPVPDIYSLICVALGSLEIREIRALLCSSGDECEKQVLLQSGDIKAMLGLTKRR
LVSSTGTFCNQQIQIMTFAEDGSSKDEQLLMPPDETILTFAEVHGMQEALLGTTTVNSIV
IWNLKTGQLLKKMHIDDSYQTCVCHRAYSEMGLLFIVLSHPCAKESQAFGSPVFQLLAIN
PMTAQSVGVLLCSLPQGQAGRFLEGDVKDHVAAAVLTSGTIAIWDLLLGHCTALLPPVSD
QSWSLVKWSGTDSHLLAGQKDGNIFIYRYF
NT seq 3333 nt   +upstreamnt  +downstreamnt
atggaagagctttccgggaagcccctcagttgtgcggagaaggaaaagttgaaggaaaag
ctagcatttttgagaaaggaatacaccaagacacttgctcgcctacagcgtgccaaaaga
gctgagaaggttaagaactctaagaaagcaatagaagattgtgtgccccagcaggaaatc
tccccacagctaagccgctctgaacctataaataaaggctttccttgtgacgcttcgtta
caaagcgaccatcttgatgaggagactggagaaaacatctctcagatacttgatggtgat
cctcagtcctttaactgtgaaagtggccaagaagtcttacatacaccaagagcaggtgac
atccaaggacaatttttacatagcaccagcagccctgatggtaagaaagggcagagtgca
tttccagggacaacaaagaagctgcggaagagatcatctgttttacaggaaaaggacgat
ttctttgacactagttctcttgtgctccctggtaggcaccaaaaaagacaggaaacagtc
agtagcaagaatcctagggccccagaaattgaaaagactcaccttttatgtctgaagtct
caaactcctgaccctccagcccttgttacagaaattgatggagggggtagattaattgta
ccatctggcaaatcagaaagaggtattgatacacctgtgagaggaaacaatgtctctagg
gagactacagttccttcatgtactgcttcagacagcaatcatagtggacaccttgaactt
acacctcctaacagtggctgtaaaattactactcagggccccgcttcatccataaacctg
gtggcacaagacaaaaaaacgactatttttacagataacccagtagtatataaacctgtg
agtgctggcagtcagctgccaggaagtcctaattcgtgttctgtaaatgacctcactcac
agtaacttgccagcaaatactaccccaaactctagatctttaaaatctcctgataacatt
gttgatgggagaaatgaaaatcttgaggaagatgaaattgttggtctatctgagaacctc
agcccagcagcagtctctcctccctccacagaaagtcaaatacattcttgtacgatgctt
gaaggccttctgtttcctgcagagtactatgttagaacaacccgtcgtatgtcagattgt
cagaggaaaatagctctggaagctgtaattcaaagtcatttgggtgtcaagaagaaagag
cgtaaaaagaaaaacaaagcaactaaaaatctagtcctctccagtgaagaaactgaccaa
agtgaaagtggtatgttggacaccagcataggacactcaagttcagaaagcctctctcag
aaactaatctcaccagttgaggtcagctctcctctgggacctgccaacaacagatctaag
aaagccactgcacggccaccaggtagagggcacagagagaaacgaacatcagcctgcacc
tccacactgggtcaccatcagctgcttttccctccttgtgccgccctggctgttaacagg
accaggggcaaattcacaaagcataagtgtcagaacagagacgtgattattcatgacttt
gaattacccgatgaagactttgggcctcttaaacttgaaaaattgaagtcctactcagaa
aaactgattgagtctcctgactcaaaaaactgtggtgagagtcttcctacagaaggaaaa
catgctgttctggaggaactgcagatagattcggaaacagagggcttggaagtggaactc
actgttctaccaggagaagcatgccatccagggccaaccctgagatggcagccagtgagc
aagggcctttcttcatccatagtgcttttcactcctacagacaccgctgcacctaacaac
agtgacaggtctactgcttccctgtgctcacctgctttccccgtcttaggcaggactcca
gcttttggctcccaagcaaccggtgagaatatatctgctgaagctggacagccttgctct
acatcccgaccttctcacttgggagaaacaaacagtcttgttaataagaataaacagtgc
gacagttcagcctgctcaccaaaactggataccagcctgcaagtgtcaggtaggcaagga
caagctacctgtgacagtgactctggcccccaagcaacacctctacccattgagtcattc
actttcagagaagatcagctttgtggaagtgcatgcctcgagttacatgaacattccacc
gaacagactgaaattgcagatctccctgcttgtgacagtttaagcccaggcaacctacag
ttggtttcagagttaaagaatccttccagttcctgctctgtggatgtgagcgccatgtgg
tgggaaagagctggtactaaggagccatgtatcataactgcttgtgaagatgtagtttct
ctttggaaaccgttggattctatgcagtgggagaaagttcatacctggcacttcacagag
gttccagtattacaaatagttccagtgcctgatatttacagtcttatatgtgtagctttg
ggaagtttggaaatcagagaaatcagggcgttgctgtgctcctctggtgatgaatgtgaa
aagcaagtcctcctgcaatctggagacataaaagctatgcttggcctgacaaagaggaga
ctggttagtagcactgggaccttttgcaatcaacaaatacaaatcatgacatttgctgaa
gatggaagcagcaaagatgaacagcttctgatgcctcctgatgagactatactgactttc
gctgaggtccacgggatgcaggaagccctgcttggtactaccactgtgaacagcattgtg
atctggaatttaaaaactggccaactcctgaaaaagatgcacattgatgactcttaccaa
acttgtgtctgtcacagagcctattctgagatggggctcctgtttattgttctgagtcat
ccttgtgccaaagagagccaggcctttggcagccccgtgtttcagctgctggcaattaac
cctatgacagctcagagtgtgggtgttctgctgtgctcccttcctcaggggcaggctgga
aggttcctggaaggggatgtgaaagatcatgttgcagcagcagtcctgacttctgggaca
attgccatttgggatttgcttctgggtcactgcacggctctcctcccacctgtctctgac
cagagttggtctttggttaaatggtcaggtacagattctcacctgttagccggacaaaag
gatggaaatatattcatataccgctacttttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (8)   
   RefSeq(nuc) (6)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (26)   

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