KEGG   Rattus norvegicus (rat): 29384
Entry
29384             CDS       T01003                                 
Symbol
Macroh2a1
Name
(RefSeq) core histone macro-H2A.1
  KO
K11251  histone H2A
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03082  ATP-dependent chromatin remodeling
rno04217  Necroptosis
rno04613  Neutrophil extracellular trap formation
rno05034  Alcoholism
rno05322  Systemic lupus erythematosus
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    29384 (Macroh2a1)
 09140 Cellular Processes
  09143 Cell growth and death
   04217 Necroptosis
    29384 (Macroh2a1)
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    29384 (Macroh2a1)
 09160 Human Diseases
  09163 Immune disease
   05322 Systemic lupus erythematosus
    29384 (Macroh2a1)
  09165 Substance dependence
   05034 Alcoholism
    29384 (Macroh2a1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    29384 (Macroh2a1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rno04147]
    29384 (Macroh2a1)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histones
    29384 (Macroh2a1)
Exosome [BR:rno04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   29384 (Macroh2a1)
SSDB
Motif
Pfam: Macro Histone_H2A_C Histone CBFD_NFYB_HMF Clp_N
Other DBs
NCBI-GeneID: 29384
NCBI-ProteinID: NP_058878
RGD: 621462
Ensembl: ENSRNOG00000011523
UniProt: Q02874 A6KAN9
Structure
Position
17:8484340..8547268
AA seq 371 aa
MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
KGKLEAIITPPPAKKAKSPSQKKPVAKKTGGKKGARKSKKQGEVSKAASADSTTEGAPTD
GFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGSTLEKKGGKEF
VEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALA
DDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGI
YVQEMAKLDAN
NT seq 1116 nt   +upstreamnt  +downstreamnt
atgtcgagccgtggtgggaagaagaaatccaccaagacctcccggtcagccaaggccggg
gtcatcttccccgtgggacggatgctgcggtacatcaagaaaggccaccctaagtatcgg
atcggagtgggggcgcctgtgtacatggctgccgtactggaatacctgaccgctgagatc
ctggagctggccggcaatgcagcgagagacaacaagaaggggcgggtcacaccgcggcac
atcctgttagcagtggccaatgatgaggagctaaaccagctgctaaaaggagtcaccata
gccagtgggggcgtgttgccgaacatccatcctgagttgctagcgaagaaacgaggatcc
aagggaaaattggaagccatcatcacgcctccaccagccaaaaaggccaagtctccatcc
cagaagaagccagtggctaagaaaacaggaggcaagaaaggggcccggaagtctaagaag
cagggagaagtcagcaaggcagccagcgcagacagtacaacggagggcgcgcctacagac
ggctttactgtcctctctaccaagagcctcttcctcggccagaagctgaaccttattcac
agtgaaatcagtaatttagccggctttgaggtggaggccataatcaatcctaccaatgct
gacattgaccttaaagatgacctaggaagcacactggagaagaaaggtggcaaggagttt
gtagaagctgttctggaacttcggaaaaagaatgggcccttggaagtagctggagctgct
gttagtgcaggccacggcctgcctgccaagtttgtgatccactgtaacagtcctgtctgg
ggcgcagacaaatgtgaagaacttctagaaaagacggtgaaaaactgcctggctctagct
gatgacagaaagctgaagtccatcgccttcccgtctattggcagtggcaggaacgggttc
ccgaagcagacagccgcccaactcattctgaaggccatctccagctactttgtgtccact
atgtcgtcctccatcaaaactgtgtactttgtgctttttgacagtgagagcataggcatc
tacgtgcaggaaatggccaaactggatgccaactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (9)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (6)   
DNA sequence (18)   
   RefSeq(nuc) (10)   
   GenBank (4)   
   EMBL (4)   
3D Structure (1)   
   PDB (1)   
Protein domain (5)   
   Pfam (5)   
All databases (48)   

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