KEGG   Rattus norvegicus (rat): 293937
Entry
293937            CDS       T01003                                 
Symbol
Pkd2l1
Name
(RefSeq) polycystic kidney disease 2-like 1 protein isoform 1
  KO
K04990  polycystin 2L1
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04742  Taste transduction
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09157 Sensory system
   04742 Taste transduction
    293937 (Pkd2l1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:rno03037]
    293937 (Pkd2l1)
   04040 Ion channels [BR:rno04040]
    293937 (Pkd2l1)
Cilium and associated proteins [BR:rno03037]
 Primary cilia and associated proteins
  Other primary cilia associated proteins
   293937 (Pkd2l1)
Ion channels [BR:rno04040]
 Voltage-gated cation channels
  Transient receptor potential channel (TRP)
   293937 (Pkd2l1)
SSDB
Motif
Pfam: PKD_channel Polycystin_dom Ion_trans Fer4_24 Golgin_A5 Mis12
Other DBs
NCBI-GeneID: 293937
NCBI-ProteinID: NP_001402765
RGD: 1306261
Ensembl: ENSRNOG00000012591
UniProt: A6JHF2 D3ZDT6
Position
1:complement(252982096..253019235)
AA seq 763 aa
MNIMENSKEQELQTLGSRVWDNPAYSSPPSPNGTPRICTVSSVALPETQPKKPEVRRQEK
TPRVPVSGCCLLICRGIRGLWGTTLTENTAENRELYVKTTLRELVVYIVFLVDVCLLTYG
MTSSSAYYYTKVMSELFLHTPSESAVSFQTISSMSDFWDFAQGPLLDSLYWTKWYNNQSL
GSSSHSFIYYENLLLGVPRLRQLRVRNDSCVVHEDFREDILNCYDVYSPDKEDQLPFGPL
NGTAWTYHSQNELGGSSHWGRLTSYSGGGYYLDLPGSRQASAEALQGLQEGLWLDRGTRV
VFIDFSVYNANINLFCILRLVVEFPATGGAIPSWQIRTVKLIRYVNNWDFFIVGCEVIFC
IFIFYYVVEEILEIRVHRFRYLSSVWNILDLVVILLSIVAVGFHVFRTLEVNRLMGELLQ
QPDTYPDFEFLAFWQTQYNNMNAVNLFFAWIKIFKYISFNKTMTQLSSTLARCAKDILGF
AIMFFIVFFAYAQLGYLLFGTQVESFSTFVKCIFTQFRIILGDFDYNAIDNANRILGPVY
FITYVFFVFFVLLNMFLAIINDTYSEVKEELAGQRDQLQLSDLLKQSYSKTLQRLRLRKE
RVSDVQKVLKGGEPEIQFEDFTNTLRELGHAEREISEVSAAFTRFDRDGDHILDEEDQAQ
MRQGLEEERMTLSAETENLGRSVGHSPPGELDAEAARGRSWVSGEEFDMLTRRVLQLQRV
LEGVVSQVDALSSKLKMLERKGELAPSPGMEEPAVWENPYNPS
NT seq 2292 nt   +upstreamnt  +downstreamnt
atgaatattatggagaattccaaggagcaggagctgcaaacactggggagcagagtctgg
gacaatcctgcctacagcagccctccttccccgaatgggaccccgaggatctgcaccgtc
tccagtgtggctctccctgagactcaacctaaaaagccagaagtcagacgccaggagaag
acaccaagagtccctgtgtccggctgctgtctcctcatctgtcgtggcatcagagggctg
tgggggacaacgctgactgagaacacagccgagaacagagagctttatgtcaagactacc
ctgagggagcttgtggtgtacatcgtgttcctcgtggatgtctgtctgttgacctacgga
atgacaagttctagtgcctattactataccaaagtgatgtccgagctgttccttcacacc
ccgtcagagtctgcagtctccttccagaccatcagcagcatgtcagacttctgggatttt
gctcagggcccactcctggacagtttgtactggacaaagtggtacaacaaccagagcctg
gggagcagctcccactctttcatctactacgagaacctgctcctgggggtcccgaggttg
cggcagctgcgggtacgcaacgactcctgtgtggttcacgaagatttccgggaggacatt
ttgaactgttatgatgtctactctccggacaaagaagaccagctcccctttggacctctc
aacggaacagcgtggacataccattcacagaatgagctggggggctcctcccactggggc
aggctcacaagctacagtggaggtggctactacttggatcttccaggatccagacaagcc
agtgcggaggccctccaaggactccaggagggactatggctagacaggggcactcgtgtg
gtctttatcgacttctccgtctacaatgccaacattaatctcttctgtattctgagactg
gtggtagagttcccagccacaggaggggccatcccgtcctggcagatccgcacggttaag
ctgatccgctacgtgaataactgggacttcttcattgtgggctgtgaagtcatcttttgc
atcttcatcttctactatgtggtagaggaaatcctggaaatccgcgtgcatcggtttcgc
tacctcagcagcgtctggaacattctggacctggtggtcatcttgctctccatcgtggct
gtggggttccatgtattccgaaccctggaagtgaaccgactgatgggagagctcctacag
cagccagacacgtatccagactttgagttcctggccttctggcagactcagtacaataac
atgaacgcggtcaaccttttctttgcttggatcaagatattcaagtacatcagcttcaac
aaaaccatgacccagctctcctccaccctggctcgctgtgccaaggacatcctgggtttc
gccatcatgttcttcattgtcttcttcgcctacgcccagctcggctacctgcttttcggg
acccaagtagaaagctttagcactttcgtcaagtgcattttcactcaattccggataatc
ctcggggattttgactacaacgccatcgacaatgccaaccgaatcctgggccctgtgtac
ttcatcacctatgtcttcttcgtcttctttgtgctcctgaacatgttcctggccatcatc
aacgacacatactcagaggtcaaggaggagctggctggccagagggatcagttgcagctt
tctgacctcctgaaacagagctacagcaagaccctacaaaggctgcgtctgaggaaagag
cgggtttcagatgtgcagaaggtcctgaagggcggggagccagagatccagtttgaagac
ttcaccaacaccttgagggagctggggcacgcagagcgtgagatctctgaggtctcggct
gccttcaccaggtttgatcgggatggggatcacatactggatgaggaggatcaggcacag
atgcgacaggggctggaagaggagaggatgaccctcagtgctgaaactgagaacctaggc
cggtctgttggccacagcccaccaggtgaattggatgcagaggctgccagaggacgaagc
tgggtctctggagaagaattcgacatgctcacaaggagagttctgcagctgcagcgtgtt
ctggaaggagttgtgtcccaggttgatgccctgagctcaaagctgaagatgctggagagg
aaaggggagttggctccctccccaggaatggaggagccagctgtttgggagaacccttat
aatccatcctag

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