KEGG   Rattus norvegicus (rat): 294018
Entry
294018            CDS       T01003                                 
Symbol
Taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    294018 (Taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    294018 (Taf5)
   03036 Chromosome and associated proteins [BR:rno03036]
    294018 (Taf5)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     294018 (Taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     294018 (Taf5)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     294018 (Taf5)
    STAGA complex
     294018 (Taf5)
    TFTC complex
     294018 (Taf5)
    SAGA complex
     294018 (Taf5)
    SLIK complex
     294018 (Taf5)
SSDB
Motif
Pfam: WD40 TFIID_NTD2 NBCH_WD40 ANAPC4_WD40 Nup160 RAB3GAP2_N CDK5RAP3 eIF2A Cytochrom_D1 PROPPIN
Other DBs
NCBI-GeneID: 294018
NCBI-ProteinID: NP_001099835
RGD: 1311332
Ensembl: ENSRNOG00000020274
UniProt: A6JHP4 D3ZH66
Position
1:255899774..255915259
AA seq 798 aa
MAALAEEQTEVAVKLESEGPPTLLPPQAGDGAGEGSGGTPNNGPNGGGGNVAAAAGGDGG
TPKPVVAVSAAAPAGAAPVPAAPAEAGAPHDRQTLLAVLQFLRQSNLREAEEALRREARL
LEEAVAGSGAPGELDGAGAEAASALLSRVTASVPGSAAPDTPGAGASVTSVFSGSASGPA
APGKVASVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYP
LFVHMYLELVYNQHESEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRT
SKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGE
AKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPNAP
PQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDS
SLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGH
SGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVS
GGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCV
RIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRD
GEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVH
LHFTRRNLVLAAGAYSPQ
NT seq 2397 nt   +upstreamnt  +downstreamnt
atggcggcgctggcggaggagcagacggaggtggcggtcaagctagagtctgagggaccg
ccaacgctgctacctccgcaggctggcgacggcgcaggcgagggtagcggtggcactcct
aacaacggccccaacggcggcggcgggaatgtggcggcggcggccggtggggacggcggg
acccccaaaccagtggtggctgtttctgccgctgccccggcgggggcggccccggtgccc
gccgctcccgcggaggccggcgctcctcacgaccgacagactcttctggctgtgctgcag
ttcctacggcagagcaacctccgcgaggccgaagaggcactgcgccgtgaggcccggctg
ctggaggaggcggtggcgggctccggagctccgggagagttggacggggctggcgcggag
gcggctagtgcgcttctcagccgggtcaccgcttcagttcccggctctgcggcccccgac
actccgggagccggcgcttcggtgacctcagtgttctcaggttcagcctcaggtcctgcg
gctccgggaaaggttgcaagtgtagctgtggaagaccagccagatgtcagtgctgtcttg
tcggcctacaaccaacaaggagaccctacaatgtatgaagaatactacagtggactgaaa
cacttcattgaatgttctctggactgccatcgagcagaattatcccaactcttttatcct
ctgtttgtacatatgtacttggagctagtttataatcaacatgaaagtgaagcaaaatca
ttctttgagaagttccacggagatcaggaatgttattaccaggatgacctacgagtatta
tctagtcttaccaaaaaggagcacatgaaagggaatgagaccatgctggactttcggaca
agtaaatttgttcttcgcatttcccgtgactcgtaccaactcttgaagcggcatcttcag
gagaaacagaacaatcagatatggaacatagttcaggagcacctctacatcgacatcttt
gacgggatgccccgcagtaagcagcagatagacgccatggtgggaagcctggcaggcgag
gctaagcgagaagcaaacaaatcaaaggtattttttggtttattaaaagaaccggaaatt
gaggtgcctttggatgatgaggatgaagaaggagaaaacgaagaggggaaacctaaaaag
aagaagcctaaaaaggatagtattggctctaaaagcaagaaacaagatcccaatgctcca
ccccaaaacagaatcccccttcccgagttgaaagattcagacaaactggacaaaataatg
aatatgaaggaaactaccaaacgagtgcgccttgggcctgactgtttaccctccatttgt
ttctatacattccttaatgcgtaccagggcctcactgcagtggatgtcactgatgattct
agcctgattgctggaggttttgctgattcaaccgtcagagtgtggtctgtgacccctaaa
aagcttcgtagtgtcaaacaagcatcagatcttagtcttatagacaaagaatcagatgat
gtcttagagagaatcatggatgagaaaactgcaagtgagttgaagattttgtatggtcac
agtgggcctgtctatggagccagcttcagtccggataggaactacctactctcctcttca
gaggatggaaccgttagactctggagcctgcagactttcacttgcttagttggatataaa
gggcacaactacccagtgtgggacacacagttttctccatatggatattatttcgtgtca
ggaggccatgaccgcgtagctcggctttgggctacagatcactatcagcctttaaggata
ttcgctggccatcttgctgatgtgaattgcactagatttcatccaaattccaactatgtt
gctacgggctctgcagacagaaccgtgcggctctgggacgtcctcaatggtaactgtgta
aggatcttcactggacacaagggaccaattcattccttgacattttctcccaatgggaga
ttcctggctacaggagcaacagatggcagagtacttctttgggatatcggacatggcttg
atggttggagaattaaaaggccacactgatacagtgtgttcacttaggtttagtagagat
ggtgagattttggcatcaggttcgatggataacacagttcggttatgggatgccatcaaa
gcatttgaagatttagaaactgatgactttactacagccactgggcatataaatctacct
gagaattcccaggagttactgttgggtacatacatgaccaaatcaacaccagtcgtacac
ctacattttacaagaagaaacttggttctagctgcaggagcttacagtccgcaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (25)   

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