KEGG   Rattus norvegicus (rat): 294027
Entry
294027            CDS       T01003                                 
Symbol
Col17a1
Name
(RefSeq) collagen alpha-1(XVII) chain isoform 1
  KO
K07603  collagen type XVII alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    294027 (Col17a1)
SSDB
Motif
Pfam: Collagen DUF2868
Other DBs
NCBI-GeneID: 294027
NCBI-ProteinID: NP_001402769
RGD: 1311130
Ensembl: ENSRNOG00000012110
Position
1:complement(256472648..256518857)
AA seq 1465 aa
MDVTKKSMRDGTEVTERIVTETVTTRLTSLPPKGSTSNGYTKTGSLGGGSRLEKQSLTHG
SSGYINSSGSLRGNASTSSYRRAHSPASTLPNSPGSTFERKTHMSRHGTYEGSSSGNSSP
EYPRKELASSSTRGRSQTRESEIRVRLQSASPSTRWTELDEVKRLLKGSRSASASPTRNT
SNTLPIPKKGTVETKTVTASSHSVSGTYDSTILDSNFPPHMWSSTLPAGSSMGTYHNNIA
TQSTSLVNTNAYSAGSVFGVPNNMASCSPTLHPGLSSCSSVFGMQNNLAPCSSVLSHGTT
TASTAYGVKKNVPQPPTVTSTGVSTSAACTTSVQSDDLLHKDCKFLILEKDNVPAKKEME
LLIMSKDSGKVFTASPASISSTSFSEDTLKKEKQAAYAADTCLKADVNGDLNTVSTKSKA
ISAENHSYDRGVGGGRGKSGVAGGGGGGGGGGSGGGTWGAAPAWCPCGSCCSWWKWLLGL
LLTWLLLLGLLFGLIALAEEVRKLKARVEELEKTKVLYHDIVKTDRSSRDRLQGEAPSLG
PGLSKAEMDDYGQEAIWLFVRNKLMTEQENGNLRGSPGPKGDTGSQGPKGDRGLPGIPGT
PGPLGHPGPEGPKGQKGSIGDPGMEGPIGQRGLAGPMGPPGEPGPPGSGEKGDRGIAGEQ
GPRGLPGVPGSPGLRGTSGSPGPQGPPGSVGPQGLRGEVGLPGVKGDKGLVGPPGPKGDQ
GEKGPRGLTGEPGIRGLPGAVGEPGAKGAMGPAGPDGQQGSRGEQGLTGMPGARGPPGPT
GDPGKPGLTGPQGPQGLPGTPGRPGTKGEPGAPGRVMTSEGSSAITVPGPPGPPGAMGPP
GPPGTPGPAGPAGLPGQQGPRGEPGLAGDSFLNSGSSISEVLSAQGVDFRGPPGPPGPRG
PPGPSIPGPPGPRGPPGEGVPGPPGPPGSFLTDSETFFSGPPGPPGPPGPKGDQGDPGVP
GTPGIPGGLSHGTSSGTMYAQGPPGPPGPPGPPGSLSSSGQELQRYIAEYMQSDNIRTYL
SGVQGPPGPPGPPGPVITITGETFDYSQLASQVVSYLRSSGYGVGLSSASSSEDILAMLR
RNDVWQYLRQHLVGPPGPPGPPGVSGDGSLLSLDYGELSRHILNYMSSSGISFGHPGPPG
PPGLPGTSYEELLTMLRGSDYRDIIGPPGPPGPPGIPGSAWSSISVEDLSSYLHTAGLSS
IAGPPGPPGPPGPRGPPGVSAALATYAAENSDNFRSELISYLTSPDVRSFIVGPPGPPGP
QGPPGDYNWGSGSSARRGTSYSSSMGTGRTNGGSLGEGGAFGAGDGGPYGTDVGPGGGYG
AAAGGGVYGTNGESFRGSFTGDLDYNTLALRVSESMQRQGLLQGMAYTVQGPPGPQGPPG
ISKVFSAYSNVTQDLMDFFRTYGAIPGPPGQKGDMGTPGPKGDRGPAGPRGPPGPPGPRG
NKGEKGDKGDQVYTGRRKRSIAIKP
NT seq 4398 nt   +upstreamnt  +downstreamnt
atggatgtgaccaagaaaagcatgcgagatggcactgaagtcactgagagaattgtcacg
gaaacagtaaccacaagactcacatccttaccaccaaaagggagcaccagcaatggatac
actaagacaggctctctgggtggaggaagccggctagagaaacaaagtttgacccatgga
agcagcggctacatcaactcaagcggaagcctccgaggcaacgcttccacctccagttac
aggagagctcactcacctgcctcgaccctgcccaactctcccggctccacctttgaaagg
aaaactcacatgagccgccatggaacttacgaagggagctccagtggcaactcctcacct
gagtatccacggaaggaactcgcctcttcttcaaccagaggacgaagccagacacgagag
agcgaaattcgagttcgactacagagtgcgtcgccatccaccagatggacagaactggat
gaagtgaagcgcttgctgaaggggagccgatctgccagtgccagccccaccaggaacacc
tccaacacactccctatccccaagaaaggcaccgtagaaaccaaaacggtgacagcgagc
tcccactcagtgtcaggaacctatgattcaacaatactggacagcaactttcccccccac
atgtggtcttccaccttgccggcagggtcctccatggggacctatcacaacaacatagcg
acccagagcacatccctcgtcaacaccaatgcctactcagcaggatcagtctttggagtg
ccaaataacatggcgtcctgctctcccaccctgcacccaggactcagcagctgctcctca
gtgtttggcatgcagaacaatctggccccctgctcttctgtcctctcccatggcacaacc
acggcttccacagcatatggtgtgaagaaaaacgtgccccagccacccactgtcaccagc
accggcgtgtccacctctgccgcctgcaccaccagtgtccagagcgacgacctcttgcat
aaagactgcaagttcctgattctggagaaagacaacgtgcccgccaagaaggagatggag
ctcttgatcatgtccaaggacagtgggaaggtcttcactgcctcccccgccagcatctct
tcaacttctttttcagaggacaccctgaaaaaggagaagcaggctgcgtatgccgctgac
acatgtctaaaggcagatgtgaacggagacctaaacactgtgtctacgaagagcaaagcc
atctcggcagaaaaccacagctacgaccgaggtgtcggtggtggcagaggcaaaagcgga
gtcgccggcggtggtggtggtggtggcggcggcggcagcggcggcggaacatggggggct
gcacctgcctggtgcccctgcggctcctgctgcagctggtggaagtggctgctgggcctg
ctgctcacttggctgctgctgctgggtctgctcttcggcctcattgccctggcggaggag
gtaaggaagctgaaggcccgcgtggaggagctggaaaagaccaaggtgctatatcatgac
atcgtcaagacggaccgaagcagcagggaccgcctccagggtgaggcacccagcctggga
cctggattaagcaaggctgaaatggacgactacggccaggaggccatctggctgtttgta
aggaacaagctgatgacagagcaggagaacggaaatctcagaggaagtcctggtccaaaa
ggtgacacggggagtcaaggacctaaaggagaccgtggccttcctgggatcccaggtacc
cctgggcccctgggccaccccggcccggaaggaccaaagggacaaaaaggcagcattgga
gatccaggcatggaaggacccataggccagagaggactagcaggccccatgggacctcct
ggtgaacctgggcctccggggtctggagagaaaggagacagagggattgctggagaacaa
ggtcctcggggtcttcccggtgtcccgggttctccgggtctcagaggtaccagtggctct
cctggtccccagggccccccaggctctgtgggtccccaagggctccgaggtgaagtggga
cttccgggtgtcaaaggtgacaaaggactcgtgggaccaccaggacccaaaggtgaccag
ggtgagaaaggacccagaggcctcacaggggagcctggcatccgaggtctgcctggagct
gtgggtgaacctggagccaaaggagcaatgggtcccgctggccccgatggacagcaaggt
tccagaggtgaacaaggcctgactgggatgcctggagcccggggcccaccaggacccacc
ggagacccagggaagccaggtctcacaggaccccaaggacctcagggacttcctggtacc
cctggccgaccagggactaaaggtgaacctggcgctccaggcagagtcatgacttcagag
ggatcctcagcaatcactgtgccgggacctcccggacctcccggtgccatgggaccccca
ggacctccagggactccaggtccggctggccctgctggtctcccaggacaacaaggccca
cgaggggagccgggacttgctggggactccttcctaaacagtggcagttccatctccgaa
gtcctctctgcccaaggtgttgactttcgaggtccccctggcccacctggcccacgaggg
ccaccagggccttccattccaggcccaccaggacccagaggcccaccaggggaaggcgta
ccaggcccacccggcccaccaggatccttcctgactgactcggaaaccttcttctctggc
cctccaggtccacctggccccccaggtcccaagggagaccaaggtgaccccggtgtccca
ggcactcctggcatccctggtggtctttctcatgggacgtcgtcaggcactatgtacgca
cagggcccacctggtcccccaggacctcctgggcctccaggatctctcagcagctccggc
caggaactccagcgctatattgcagagtacatgcaaagtgacaacatcaggacttatctc
tcaggagttcagggtccccccggcccaccaggtcccccagggcctgtcatcaccatcaca
ggggagactttcgactactcccagctggcaagccaggttgtgagttacttgcgatcatca
ggctatggtgttggcttgtcctctgcctcctcctcagaagatatcttggccatgctgaga
cgcaatgatgtgtggcagtacctacgtcagcacctggtgggccctccgggtcccccggga
ccaccaggagtcagtggagatgggtccctcctgtctttggactatggagagctaagcaga
cacattctcaactatatgtcaagttctgggatcagctttgggcatcctggaccaccgggc
ccccctggcctgccaggaacatcctatgaggagctactgaccatgctccgagggtctgac
tacagagacatcattggacctccagggcccccagggccacccgggataccaggcagtgca
tggtccagcatcagtgtggaggacctgtcgtcatacttgcacactgctggtctgtcctcc
atcgcaggccccccgggccccccaggtcccccaggtcctcgagggcccccgggtgtgtca
gcagctctggccacctacgcagctgagaacagtgacaacttccgcagtgagctgattagc
taccttacaagtcctgatgtccgcagcttcatcgttggccctccaggtcctccagggcca
cagggaccacctggagactacaactggggtagcggctcctcagccagaaggggcacttcc
tacagctcttccatgggcacagggagaaccaatggtggctccctgggcgaaggtggagcc
tttggtgcaggagatgggggcccctacggcactgacgtcggcccaggcggaggctacggg
gcagctgcaggtggtggtgtatatggcaccaatggcgaatcattccggggcagcttcact
ggagacctagattataacacgctggcattgcgggtgtcggagagcatgcagcgtcagggt
ctgctacaagggatggcctacactgtccagggcccaccagggccacaaggccctcctggc
atcagcaaggtcttctctgcctacagcaacgtgacacaagacctcatggacttcttccga
acatatggcgctatcccaggaccccctgggcagaaaggagacatgggaaccccaggtccc
aaaggtgacaggggccctgctggaccacgaggtcctccggggcccccgggcccccgaggg
aacaaaggagagaaaggggataaaggtgaccaagtctatactgggaggaggaagagaagt
attgccatcaagccataa

  All links  
Ontology (1)   
   KEGG BRITE (1)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system