KEGG   Rattus norvegicus (rat): 294232
Entry
294232            CDS       T01003                                 
Symbol
Dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:5.6.2.6]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    294232 (Dhx16)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rno03041]
    294232 (Dhx16)
Enzymes [BR:rno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     294232 (Dhx16)
Spliceosome [BR:rno03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    294232 (Dhx16)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    294232 (Dhx16)
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C DEAD HA2_N AAA_22 AAA_19 AAA_30 nSTAND3 SecA_DEAD Flavi_DEAD SRP54
Other DBs
NCBI-GeneID: 294232
NCBI-ProteinID: NP_997661
RGD: 1302963
Ensembl: ENSRNOG00000030157
Vega: OTTRNOG00000001534
UniProt: A0A9K3Y7B8 Q6MG13
Position
20:complement(2866804..2879790)
AA seq 1044 aa
MATPAGLERWVQEELHSVLGLSERHVAQFLIGTAQRCASAEEFVQRLRDTETLDLGGPAR
DFALKLWSKVPRKAVVEKPARAAEREARALLEKNRSYKLLEDSESGEEAVARDGSSLQKK
RKRRKHLRKKQQEEEEEEEEASESGKRKTGGSKSPTEEKPASEDEWERTERERLQDLEER
DAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLAKR
EREKLEDLEAELADEEVLFGDVELSRHERRELKYKRRVRDLAREYRAAGEQEKLEATNRY
HMPKETRGQPARATDIVEEESGAPGEEQRRWEEARLDAASLKFGARDAAAQEPQYQLVLE
EDETIEFVRAAQLQGDEEPSSGPPLSAQAQQKESIQAVRRSLPVFPFREELLTAIANHQV
LIIEGETGSGKTTQIPQYLFEEGYTKKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEV
GYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIK
DVARFRPELKVLVASATLDTARFSAFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVV
SVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQA
RIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKA
SANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMH
FDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCS
EEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQW
CYENFVQFRSMRRARDVREQLEGLLERVEVGLTSCQGDYVRVRKAITSGYFYHTARLTRS
GYRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYK
AKELEDPHAKKMPKKVGKTREELG
NT seq 3135 nt   +upstreamnt  +downstreamnt
atggcgacgccggcgggactggagcggtgggtgcaggaggagctgcactcggtgctgggg
ctgagcgagcggcacgtcgcgcagttcctgatcggcacggcgcagcgctgcgcctccgcc
gaggagtttgtgcagcgcttgcgtgacacagagaccctggacctcggcgggccggcgcgg
gacttcgcgctgaagctctggagcaaggtgccacggaaggccgtggttgaaaagccagct
cgtgcagctgagcgagaggcccgagccctgctggagaagaaccgatcttataaattgttg
gaggacagcgagagcggagaggaagcagtggccagggacgggagcagcctccagaagaag
cggaagagacggaaacacctgaggaagaaacagcaggaggaggaggaggaggaggaggaa
gcctctgagtcagggaagaggaagacagggggcagtaaatcacccacggaggagaagcca
gcctcagaggatgagtgggagagaacagaacgtgagcgtctccaggacttggaggaacgg
gatgcctttgcagagcgggttcggcaacgagacaaggaccggacccggaatgttctggag
cggtcagataagaaggcttatgaagaggctcagaagcgcctcaagatggctgaggaagac
cggaaagccatggtccctgagctccgtaagaagtctcgtcgggaatacctggcaaagcgg
gagcgggaaaagctggaggacctggaggcagaactggctgatgaggaggtcctgtttggg
gacgtggagctgagccgccatgagcgccgggagctcaagtacaagcggcgtgtgcgggac
ctggctcgggagtaccgggcggctggcgagcaggagaagctggaggccactaatcgctac
cacatgcccaaggagactcgaggacagcccgctcgagccaccgacatcgtcgaggaggaa
tcaggggccccgggcgaggagcagcggcgctgggaggaggcccgtctggacgccgcatcc
ctcaagtttggggcccgagacgctgctgcccaggaaccccagtaccagctggtgctggag
gaggacgagaccatcgagttcgtccgtgccgctcagctccagggcgacgaggagccgtca
tcaggcccgcccctgtcagcccaggcccagcagaaggagtccatccaggccgtgcgccgc
agcctgccagtgttccccttccgagaggagctcctgaccgccattgccaaccatcaggtc
ctcatcatcgagggcgagactgggtcagggaagaccacacagatcccacagtacctcttt
gaggagggttacaccaagaagggtatgaagattgcttgcacccagccccggagagtggcg
gccatgagtgtggcagcccgagtggcccgggagatgggggtgaagcttgggaatgaggtg
ggctacagcatccggtttgaggactgcacatcagagcgaactgttctccgctacatgaca
gatggaatgctactccgggagttcctctctgagcctgacctcgcaagttacagtgtggtg
atggtggatgaagctcatgagcggaccttgcacacagacattctctttggattgatcaaa
gatgttgctagattccgacctgagctcaaggtcctggtggcttcggccacactggacact
gctcgtttttctgccttcttcgatgatgcccctgtcttccgaatccctggacgcaggttt
ccagttgacatcttctataccaaggccccagaggctgactacctggaagcctgtgtggtg
tctgtgctgcagatccatgtgacccagccccctggggatatactggtgttcctaacggga
caggaggagattgaggctgcctgcgagatgctccaggaccgctgccgcagactgggctcc
aagatccgggagctcctggtgttgcccatttacgccaacctgccctccgacatgcaggct
cgaatcttccagcccacgccccccggggcccggaaggtggttgtggcaacaaacattgca
gaaacttccctcaccatcgaaggcatcatttatgtgctggatccagggttctgcaagcag
aagagctacaaccctcgaacaggcatggagtcgctcaccgtcacaccctgcagcaaggct
tcagccaatcagcgggccggccgcgcaggtcgagtggctgcagggaagtgcttccgcctg
tatacagcctgggcctaccagcatgagctggaggagaccacagttcctgagatccagagg
actagcctgggcaatgtggtgctcctgctaaagagcttagggatccacgacctgatgcac
tttgactttctggacccgccaccatatgagaccctgctgctggctttggaacaactttat
gcacttggcgccctcaaccaccttggagagctcactacgtctggtcgaaagatggcagag
ctgcccgtggatcctatgttgtctaaaatgatcttggcctctgagaagtatagctgttca
gaagagatcctgaccgtggctgctatgctgtctgtcaacaattccatcttctaccggccc
aaggacaaggttgtccatgctgacaacgcccgtgtcaacttcttcctccctggtggggac
cacctggttctgctgaatgtgtacacgcagtgggcagagagcggctactcttcccagtgg
tgctatgaaaatttcgtacagttcagatccatgcgccgagcccgggatgtgcgggaacaa
ctagaggggctcttggagcgcgtggaagttggcttgacttcctgccaaggtgactacgtt
cgtgtgcgaaaggccatcacttcaggttatttttaccacacagcaaggctgactcggagt
ggctaccgcacagtgaagcagcagcagacagtgtttattcatcccaactcctctctcttt
gaacaacagccacgctggctgctctaccatgagcttgtcttgaccaccaaggagttcatg
agacaggtattggagatcgaaagcagctggcttttggaagtggctccccactactataag
gccaaggagctagaagatccccatgctaagaaaatgcccaaaaaagttggcaagacacga
gaagagctgggttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (9)   
   UniProt (2)   
   RefSeq(pep) (7)   
DNA sequence (9)   
   RefSeq(nuc) (7)   
   GenBank (1)   
   EMBL (1)   
Protein domain (12)   
   Pfam (12)   
All databases (42)   

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