KEGG   Rattus norvegicus (rat): 294236
Entry
294236            CDS       T01003                                 
Symbol
Gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03022  Basal transcription factors
rno03420  Nucleotide excision repair
rno05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    294236 (Gtf2h4)
  09124 Replication and repair
   03420 Nucleotide excision repair
    294236 (Gtf2h4)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    294236 (Gtf2h4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    294236 (Gtf2h4)
   03400 DNA repair and recombination proteins [BR:rno03400]
    294236 (Gtf2h4)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     294236 (Gtf2h4)
DNA repair and recombination proteins [BR:rno03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     294236 (Gtf2h4)
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3
Other DBs
NCBI-GeneID: 294236
NCBI-ProteinID: NP_997666
RGD: 1303309
Vega: OTTRNOG00000001603
UniProt: Q6MG20
Position
20:3076110..3081805
AA seq 463 aa
MEITPARGGLNRAHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRM
LFLEQPLPQAAVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLR
IALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLL
SQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQ
LSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSSGVSGAGG
TVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI
TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE
LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQKHSS
NT seq 1392 nt   +upstreamnt  +downstreamnt
atggagatcacccccgcgaggggtggactgaaccgagcacacctacaatgcaggaatcta
caggagttcttaggcggcctgagccctggggtgctggaccgattgtatggacaccctgcc
acttgtctggctgtcttcagggagctcccttccttggctaagaactgggtgatgagaatg
ctctttctggagcagcctctaccacaggctgccgtggccctgtgggtgaagaaggagttc
agcaaggctcaggaggaaagtaccgggctgttgagtggcctccgtatttggcatacccag
ctgctccccggtggactccagggcctcatcttgaaccctgtcttccgccagaacctccga
attgctcttctgggtgggggcaaggcctggtctgatgacacaagtcagctgggaccagac
aagcacgcccgggatgtcccctcacttgataagtacgccgaggagcgctgggaggtggtc
ttgcatttcatggtgggctcccccagtgcagctgtcagccaggacctggctcaactcctc
agccaggccgggcttatgaaaagcaccgaacccggagagccaccgtgtatcacttccgct
ggcttccagttcctgctcctagacacgcctgcccagctctggtacttcatgctgcagtat
ctgcagacagcccagagtcggggcatggatctagtggagattctctccttccttttccag
ctcagtttctctactcttggcaaggactactccgtggaggggatgagtgattctttgttg
aacttcctgcaacacctgcgtgaattcgggcttgttttccagaggaagaggaagtcccgg
cgttactaccccacacgcctggccatcaacctctcatctggtgtctccggggctgggggc
actgtgcaccagcctggcttcattgtcgtcgaaaccaattacagactgtatgcctatacc
gagtcggagctgcagatcgccctcattgctcttttctccgagatgctctatcgattcccc
aacatggtggtggcacaagtgacccgggagagcgtgcagcaggccatcgccagtggcatc
actgcccagcagattatccatttcctaaggaccagggcccatccagtgatgctcaaacag
actcctgtgctgccccccaccataacagaccagattcggctgtgggagctggaaagggac
agacttcggttcactgaaggcgttctgtacaaccagttcctatcgcaagtggactttgaa
ttgctgctggcccacgcgcgggagctgggcgtgctcgtgttcgagaactcggccaagcgg
ctgatggtggtgacaccggcggggcacagcgacgtcaagcgcttctggaagcggcagaag
cacagctcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (12)   
   RefSeq(nuc) (4)   
   GenBank (4)   
   EMBL (4)   
Protein domain (3)   
   Pfam (3)   
All databases (32)   

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