KEGG   Rattus norvegicus (rat): 294252
Entry
294252            CDS       T01003                                 
Symbol
Msh5
Name
(RefSeq) mutS protein homolog 5
  KO
K08741  DNA mismatch repair protein MSH5
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rno03036]
    294252 (Msh5)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Meiosis-specific proteins
   Others
    294252 (Msh5)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_IV
Other DBs
NCBI-GeneID: 294252
NCBI-ProteinID: NP_997701
RGD: 1303008
Ensembl: ENSRNOG00000000857
Vega: OTTRNOG00000001820
UniProt: Q6MG62 A0A0H2UI03
Position
20:3779180..3797996
AA seq 830 aa
MAFRATPGRTPPGPGPGVPSASFSSPQPAMAAPGGIEEEDEEEPAEIHLCVLWSSGYLGI
AYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDEAMTQFLGKLASQEHR
EPKRPEIILLPSVDFGPEISKQRLLSGNYSFISESMTATEKILFLSSIIPFDCVLTVRAL
GGLLKFLSRRRVGVELEDYSVGVPILGFKKFVLTHLVSIDQDTYSVLQIFKSESHPSVYK
VASGLKEGLSLFGILNRCRCRWGQKLLRLWFTRPTRELRELNSRLDVIEFFLMPQNLDMA
QMMHRLLSHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDI
TQEFSDDLHHIASLIGKVDFEESLAENRFTVLPNIDPEIDAKKRRLMGLPSFLTEVAQKE
LENLDSCIPSCSVIYIPLIGFLLSIPRLSFMVEASDFEIEGLDFMFLSEDKLHYRSARTK
ELDALLGDLHCEIRDQEMLLMHQLQCQVLARAPVLTRVLDLASRLDVLLALASAARDYGY
SRPHYSPCIQGVRIKNGRHPLMELCARTFVPNSTDCGGDQGRVKVITGPNSSGKSIYLKQ
VGLITFMALVGSFVPAEEAEIGVIDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATE
HSLVLIDEFGKGTNSVDGLALLTAVLRHWLALGPSCPHIFVATNFLSLVQLQLLPQGPLV
QYLTMETCEDGNDLVFFYQLCHGVASASHASYTAAQAGLPDPLIARGKEVSDSIRSGKPV
KPMHELVRRTQMENCQALVDKFLKLDLEDPSLDLDIFISQEVLPAATTIL
NT seq 2493 nt   +upstreamnt  +downstreamnt
atggctttcagagcgaccccaggccggacgccgccgggacccggccccggggtcccctca
gccagcttctccagccctcagcctgcaatggcggcgcctggaggtatcgaggaagaggac
gaggaggagccggccgagatccatctgtgtgtgctgtggagctcgggttatctgggcatt
gcttactatgacactagtgactccacgatccacttcatgccagatgccccagaccacgag
agcctgaagcttctccagagagttctggatgaaatcaacccccagtctgttgtgacaagc
gccaaacaggatgaggctatgactcaatttctagggaagcttgcctcccaggagcacaga
gagccaaagagaccagaaatcatccttctgccaagcgtggattttggtccagagataagc
aaacagcgcctcctttccggaaactactccttcatctccgagtccatgaccgccactgag
aaaatcctcttcctctcctccattattccctttgactgtgtcctcacggtccgggcactt
ggagggctgctcaagttcctgagtcgaagaagagttggggttgaactggaggactacagt
gttggcgtccctatcctgggatttaagaagtttgtattgacccatctggtgagcatagat
caagacacttacagcgttctacagattttcaagagtgagtctcacccctcagtgtacaaa
gtagccagcgggctgaaggaggggctcagcctctttggaatcctcaacagatgtcgctgt
aggtggggacagaagctgctcaggctatggtttacacgtccgacccgggagctacgggag
ctcaattcccgtctggatgtcattgagtttttcctgatgcctcagaacctggacatggcc
cagatgatgcaccgtctcctgagccacatcaagaacgtgcctctgattctgaaacgcatg
aagttgtcccataccaaggtcagtgactggcaggtgctctacaagactgtgtacagcgcc
ctcggcctgagggatgcctgccgttccctgccccagtccatccagctttttcgggacatt
acccaggagttctctgacgacctgcaccacattgccagcctcatcgggaaggtggacttc
gaggaaagtcttgctgaaaatcgcttcacagtcctccccaacatagatcctgaaatagac
gctaaaaagagaaggctgatggggcttccgagtttcctcacggaagttgctcagaaggag
ctggagaacctggactcttgcatcccctcatgcagtgtcatctacatccctctgatcggc
ttcctcctttccattccccgattgtctttcatggtggaggccagtgactttgagattgag
ggactggacttcatgtttctctcagaggacaagctgcactaccgtagtgcccggaccaag
gagctggacgcactgctgggagacctgcactgcgagatccgggaccaggagatgctgctg
atgcaccagctgcagtgccaggtgctggcacgggctccggtcttgactcgggtactggac
cttgcctcccgcctggacgtcctgttggctcttgccagtgccgcccgggactacggctat
tcgagaccgcattactctccctgcatccagggagtacgaatcaagaatggccggcatcca
ctgatggagctgtgcgcacggaccttcgtgcccaactccacagactgcggtggggaccag
gggagggtcaaagtcatcactggacccaactcttcagggaaaagcatatatctgaaacag
gtaggcttgatcaccttcatggccctggtgggcagcttcgtgcctgcagaggaggcagaa
attggggtaatcgacgccatcttcacccgaattcacagctgcgagtccatctccctcggt
ctctccaccttcatgattgatctcaaccaggtggcgaaagcagtgaacaatgccacagag
cactctctggtccttattgacgaattcgggaagggaaccaactcggtggatggtctggca
cttctgactgctgtgctccgtcactggctagcactgggacccagctgcccgcacatcttt
gtggccaccaacttcctgagccttgttcagctgcagctgctgccgcaaggacccctggta
cagtatttgaccatggagacttgtgaggatgggaacgaccttgtcttcttctatcagctt
tgccatggcgtcgccagtgccagccatgcctcctacactgcggcccaggctggacttcct
gacccactcattgctcgaggcaaagaggtctcagactcgatccgcagcgggaagcccgtc
aagcccatgcatgaacttgtgaggaggacccagatggaaaattgccaggccctggtggat
aaatttctaaaattggacttggaagatccctcactggacctggacattttcattagtcag
gaagtgctccctgccgccaccaccatcctttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (12)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (9)   
DNA sequence (13)   
   RefSeq(nuc) (11)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (38)   

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