KEGG   Rattus norvegicus (rat): 294260
Entry
294260            CDS       T01003                                 
Symbol
Skic2
Name
(RefSeq) SKI2 subunit of superkiller complex protein
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    294260 (Skic2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    294260 (Skic2)
Enzymes [BR:rno01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     294260 (Skic2)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     294260 (Skic2)
  mRNA degradation factors
   3'-5' decay
    Ski complex
     294260 (Skic2)
SSDB
Motif
Pfam: DSHCT Ski2_N MTR4_beta-barrel DEAD MTR4-like_stalk Helicase_C ResIII ALTTAQ_rpt DUF3516
Other DBs
NCBI-GeneID: 294260
NCBI-ProteinID: NP_998724
RGD: 1303059
Ensembl: ENSRNOG00000000421
Vega: OTTRNOG00000001713
UniProt: Q6MG76
Position
20:3987130..3997887
AA seq 1241 aa
MMETERLVLPPPDPLNLPLRALEVGCTGRWELLNVPGPPESTLPHGLPPCAPDLCQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKTDPWSLLAALGTPVPSDLQAQRHPTTGHILGYKEVL
LENTNLSATTSLSLRRPPGPASQSLWGNPTQYPFWPGGMDEPSITDLSTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPKAPVPGLLSLSRLLEPLDLSGGDEGEGEAAGGPRGDAASASP
SSTPLIRASSLEDLVLKEASTVVSTLEPLKPPPQEQWAVPVDVTSPVGDFYRLIPQPAFQ
WAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS
NQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVH
YINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVARPVP
LEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQPTHQGG
PAQDRGVYLALLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFLQR
CLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFA
MGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVPEM
ADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKAHEQAL
ADLTKRLGALEEPDVTGQLADLPEYYSWAEELTETRNMIQRRIMESVNGLKSLSVGRVVV
VKNEEHHNALGVILQVSSNSTSRVFTTLVLCDKPAVSENPRDKGPATPDVPHPDDLVGFK
LFLPEGPCEHTVAKLQPGDVAAISTKVLRVNGEKISEDFSKRQQPKFRKDPPLAAVTTAV
QELLRLAQAYPAGPPTLDPINDLQLKDVAVVEGGLRARKLEELIRGAQCVHSPRFPAQYV
KLQERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVACAMS
SHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVKAVAKRI
GEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQRLAE
MCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq 3726 nt   +upstreamnt  +downstreamnt
atgatggagaccgagcgactcgtgctgcctcccccagaccccctgaacctgccccttcga
gctctggaagtggggtgcactggccgttgggagctgctaaacgtgccagggcctccagag
agtactcttccccatggcctccctccctgtgccccagatctgtgccaggaagcagagcag
ttgtttctgtcgtctccggcctggcttcctctacacggtgtggagcactcagctcgaaaa
tggcagaggaagacagatccctggtcgcttctggctgctctggggactccagtcccatcc
gaccttcaggcccagagacacccaaccacaggccatatactgggctataaggaggtcctg
ctggagaacacgaacctgtcggccaccacctccttgtcccttcgccggcctccagggcca
gcctcccagtcgctatggggcaatccgacacagtaccctttctggccgggtgggatggac
gagcccagcataactgatctgagtactcgggaggaagccgaggaggagatagactttgag
aaagatcttctcaccgttccacccggcttcaagaaaggggtggattttgcccccaaagct
cctgtgccaggtttgctcagcctcagccgtctgctggagcctctggatctgagtggaggt
gatgagggtgagggagaggcagcaggaggtcctagaggggatgcggcctcagcctctccc
tccagcactcccctgatccgggcaagcagcttggaggacctagtgttgaaggaagcttcc
acagtcgtatccaccctggagcccctcaaacctccacctcaggaacagtgggctgtgcct
gtggacgtcacctcccccgtgggtgatttttaccgtctcatccctcagccggccttccag
tgggcgttcgagccagatgtgtttcagaagcaggccatcctgcacttggagcagcacgac
tctgtctttgttgcagctcacacatccgctgggaagacggtggtggccgagtatgccatt
gccctggcccagaaacacatgacccgtaccatctacacttctcctatcaaagccctgagc
aaccagaagtttcgggacttccgaaacacattcggggatgtgggactgctcacgggggat
gtgcagctgcacccagaggcctcctgcctcatcatgaccacggagatccttcgctccatg
ctgtacagtggctcagacgtcatccgagacctggagtgggtcatttttgatgaagtccac
tatatcaatgatgctgagcgtggggtcgtgtgggaggaggtgctcattatgctccctgag
cacgtctccatcatcctgctgagtgccaccgtccccaacgccctggagtttgctgactgg
atcgggaggctgaagcggcggcagatctatgtgatcagcacggtggcccgtcccgtcccc
ttggagcactatctcttcacaggaaacagccccaagacacagggcgaactcttccttctg
ctggactcccgaggggccttccacaccaaggggtactacgctgccgtggaggccaagaaa
gagaggatgagcaaacacgcccagaccttcggggccaagcagcccacacaccagggtggg
cctgcgcaggaccgtggggtgtacctggccttgctggcttccctccggacccgggctcag
ttgcctgtggtagtgttcaccttctcccgaggccgctgtgatgaacaggcttcaggtctc
acctccctagacctcacaacaagctcagagaagagtgagatccacctcttcctgcagcgc
tgtcttgcccggctccgaggctctgaccgacagctcccccaggtcctgcacatgtcggag
ctcctccgccgaggcctgggtgtgcaccacagcggcatcctgcccatccttaaggagatt
gtggagatgcttttcagccggggcctagtcaaggtcctgtttgccaccgagacttttgcc
atgggggtaaacatgccagccaggacagtggtgtttgactccatgcgcaaacatgatggc
tccaccttccgggacctgctgcctggagagtacgtgcagatggcaggccgggcgggccgg
aggggcctggaccccacgggcaccgtcatccttctctgtaagggccgagtgcctgagatg
gcagatctacaccgcatgatgatggggaaaccatcacagcttcagtcccagttccgcctc
acatataccatgatcctcaacctgctgcgggtggacgccctcagagtggaagacatgatg
aagaggagcttctcagagttcccctcccgcaaggacagcaaggcccatgagcaggctctg
gctgacctcaccaagaggctgggggctttggaggagcctgatgtgactggtcagttggct
gacctgcctgagtattacagctgggcggaggagctgacagagacccggaacatgatccag
cgacgcatcatggagtctgtgaacgggctgaaatctctgtcagtgggaagggtggtggtt
gtgaagaatgaagagcatcacaatgcgctgggtgtgatcctgcaggtctcctcaaactcc
actagccgagtatttacaaccttggtcttgtgtgataaacctgctgtgtctgagaaccca
agggacaaggggccagccactccagatgtgccccacccagatgaccttgtaggcttcaag
ttgttcctgcctgaagggccctgcgagcacactgtggccaagctccagccaggggatgtg
gctgccatctctaccaaggtgctccgggtgaatggggagaagatttctgaggacttcagc
aagaggcagcaaccgaaattcaggaaggaccctcccctcgcggccgtgaccactgctgtt
caggagctgctgcgtctggcccaggcctatccagcaggacccccaaccctcgaccctatc
aacgacctgcaactgaaggatgtggcagtggtagaaggtgggctccgggcccggaagctg
gaggagctgatccgaggcgctcagtgtgtacacagcccccggtttcctgcccagtatgtg
aagctacaggagcgaatgcagattcagaaggaaatggagaggctgcgcttcctcctgtct
gaccagtcgctgttgctgctccccgagtaccaccagcgtgtagaggtgcttcggaccctg
ggctatgtggatgaggctggcacagtgaagctggcgggccgggtggcctgtgccatgagc
agccatgagctgctcctcactgaactcatgtttgacaatgcactgagtgctctgcgacca
gaggaaatagcagctctgctctctggtctggtgtgccagagccccggagaccctggggat
cagctgccaagcaccctcaaacagggggtagaacgcgtcaaagctgtggccaagcggatt
ggtgaggttcaggtggcctgcggcctgaaccagacggtggaggaatttgtgggggagctg
aattttgggctggtggaagttgtttatgagtgggctcggggtatgcccttctccgagttg
gcagggctctcggggacccccgaaggcttggttgtccgctgtatccagcgcctggctgag
atgtgccgctcacttcgaggggcggcccgtttggtaggagagcctgtgttaggggccaag
atggagacggcagccaccttgctccggagggacatcgtcttcgcagccagcctctatacc
cagtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (9)   
   Pfam (9)   
All databases (26)   

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