KEGG   Rattus norvegicus (rat): 294279
Entry
294279            CDS       T01003                                 
Symbol
Col11a2
Name
(RefSeq) collagen alpha-2(XI) chain isoform 1 precursor
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04820  Cytoskeleton in muscle cells
rno04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:rno00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    294279 (Col11a2)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    294279 (Col11a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:rno00536]
    294279 (Col11a2)
Glycosaminoglycan binding proteins [BR:rno00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   294279 (Col11a2)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1
Other DBs
NCBI-GeneID: 294279
NCBI-ProteinID: NP_001388231
RGD: 2373
Ensembl: ENSRNOG00000000463
Vega: OTTRNOG00000001663
Position
20:complement(4788829..4818492)
AA seq 1736 aa
MERCSRCHRLLLLLPLVLGLSAAPGWAGAPSVDVLRALRFPSLPDGVRKSKGVCPADVAY
RVARPAQLSAPTRQLFPGGFPKDFSLLTVVRTRSGLQAPLLTLYSAQGVQQLGLELGRPV
RFLYEDQRGRPQASAQPIFRGLSLADGKWHHVAVAVKGQSVTLIVDCKKRVTRPLPRSVH
PVLDTHGVVIFGAHVLDDEVFEGDVQELLIVPGVQAAYQSCGQKDLECEREQRDGPQTQK
PHRAQRSPKKEPARLHKPQNQEPQQQPTESLYYDYEPPYYDVMTTETSPDYQYPTPGEEE
GVLESSLLPSLEEEQTDLQVPPTADSFQAEEYGEGGTEPPAGFYDYTYGYGDDYREETEL
GPALSAETDHTGAVAHGPRGLKGEKGEPAVLEPGMFVEGPPGPEGPAGLAGPPGIQGNPG
PVGDPGERGPPGRAGLPGSDGPPGPPGTSLMLPFRFGSSGGDKGPVVAAQEAQAQAILQQ
ARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRA
GADGARGMPGEPGVKGDRGFDGLPGLPGEKGQRGDTGAQGLPGPPGEDGERGDDGEIGPR
GLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLP
GPQGAIGPHGEKGPRGKPGLPGMPGSDGLPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR
GVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPT
GDPGPTGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGER
GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPAGKD
GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGESGPMGERGHPGPPGPPGEQGLPGTA
GKDGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGER
GAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA
GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAK
GDEGTRGFNGPPGPIGLQGLPGPFGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP
GGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQAGEAGPPGPKGPTGDD
GPKGNPGPVGFPGDPGPPGEAGPRGQDGAKGSQGEDGEPGQPGSPGPTGENGPPGPLGKR
GPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRP
GATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPTGEQGEKGDRGLPGPQGSP
GQKGETGIPGASGPIGPGGPPGLPGPSGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEV
IQPLPIQMPKKTRRSVDGSKLMQDEEATPTGGAPGSPAGLEEIFGSLDSLREEIEQMRRP
TGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVT
QFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSGVSQDGPLKLRGANEDELSPETSP
YVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPTRRGGVLLGPVCFMG
NT seq 5211 nt   +upstreamnt  +downstreamnt
atggagcggtgcagccgctgccaccgcctcctactgctcctacctctggtgctgggtctg
agtgctgccccaggatgggcaggtgcaccctctgtggatgtgctacgtgccctgaggttc
ccctcccttcccgatggtgttcggaaatcaaaaggggtctgtccagctgatgtggcttac
cgtgtggcacgacctgcccagctcagcgcacccacacgccagctcttcccaggaggcttt
cccaaagatttctctctgctgactgttgtccggacccgctctggcctccaagctcccctc
ctgactctatacagtgcccagggagtccagcaactgggcctggagctcggtcgtccagtc
cgctttctctatgaggaccagaggggacggccacaagcctccgctcagcccatcttccga
ggcctgagcctcgctgatggcaagtggcaccatgtggctgtagctgtgaagggtcagtct
gtcactctcattgtggactgtaagaagcgagtcacccggccccttccccgaagcgtgcat
ccggtgctggacacccacggggtggtgatctttggtgcccacgtcctcgatgatgaagtc
tttgaaggtgatgttcaggaactcctcattgtcccgggcgtccaagctgcctatcagtct
tgtggacagaaggacctggaatgcgagagagaacagagggacgggcctcagactcagaag
cctcacagggcccagagatctccaaagaaggagccagccagacttcataagccacagaac
caggagccccagcagcagcccactgaatctctctactatgactacgaacccccctattac
gatgtgatgactacagagacatcccctgattaccagtaccccaccccaggtgaagaggaa
ggagtcctggagtccagcctcttgccatctcttgaagaggagcagacagatctccaggtc
cccccaacagctgacagtttccaggcagaggaatatggggagggaggcacagagccccca
gcagggttctacgattacacctatggctatggggatgattatcgtgaggagaccgagctt
ggccctgccctctctgcggagacagatcacacaggagccgttgcccacggaccccggggg
ctaaagggagagaagggagagcctgcagtgctggagcctggtatgtttgtagagggacct
ccaggcccagaaggcccagcggggttagctggaccccctggcatccaggggaacccaggc
ccagttggagaccctggcgagaggggcccccctggccgggcagggctccctggatcagac
ggacctcctggtcctcctggtacatctctgatgctcccattccggtttggcagcagtggt
ggtgacaagggccccgtggtggcagcccaggaggcccaggcccaggcaattctgcagcag
gcacggctggccctccgtgggccccctggccccatgggatacacgggccgtcctggaccg
ttgggtcagcctgggagccctggcttgaagggagaatctggagacctgggcccacagggc
cccagaggacctcagggcctcacaggtcctcctggcaaggctgggcgaaggggccgagca
ggtgctgatggagcccgtgggatgcccggagaacctggcgtgaagggtgaccgaggcttt
gacggactgcctgggctacctggtgaaaagggacaaaggggtgacacaggtgctcagggc
cttcctgggcctcccggtgaggacggagagaggggtgacgatggagagattgggccccgc
gggctgcctggagagtcaggacctagaggactccttggccctaaaggccctcctggtatt
cctgggcccccgggagtccgaggcatggatggtccccatggccccaaagggagcttggga
cctcaaggagagccagggcctcccggacaacagggcactcctggaactcagggcctcccc
ggacctcagggtgccattggacctcatggagagaagggccctcgtgggaaaccaggcctc
cctggcatgccgggatcagatggactcccgggccacccagggaaggaaggaccccctgga
accaaagggaaccagggcccctccggacctcagggtcctttaggatacccaggccctcga
ggcgtcaagggcgtggatgggattcggggcctgaagggccacaagggtgaaaagggtgag
gacggctttcctggattcaaaggtgacataggtgtgaaaggagacaggggcgaggtcgga
gtccctggttccaggggagaagatggccccgaagggccgaaagggcgcactggacctacc
ggagaccccgggcccacggggctcatgggcgagaagggcaagctaggtgttcctggtctg
cctggctaccccggacgccagggtcccaagggatctctgggttttcctggttttcctgga
gccagtggagagaagggagctcggggcctgtctgggaaatcaggacctcggggagaacgg
ggccccacgggtccaaggggtcagcggggacctcgaggtgccactgggaagtctggagct
aagggaacatcaggtggtgatggtcctcacgggccgcccggagagaggggtcttcctgga
ccgcaaggccccaatggattccctggccccaaaggccctccgggccccgcagggaaagac
gggctgccgggacacccaggccagagaggagaagtgggattccaagggaagaccggcccc
ccaggcccgcccggagtggtgggacctcagggagcagctggggaaagcggccccatgggg
gagagaggtcaccctggccccccaggacctcctggagagcaagggctgcccggaactgct
ggaaaagatgggaccaagggtgaccccgggccccccggggccccagggaaggatggcccc
gctggtctgagaggcttcccaggagagcgaggcctcccgggcactgctggcggacctggc
ttgaagggaaatgaaggcccagctggccctcctggccctgcaggctctcctggcgagcga
ggtgcagcaggatcagggggccccattggtccccctggacgtccaggcccacagggtccc
cctggggcagcaggagagaaaggcgtgccgggtgagaaaggccctattggtcccacgggt
cgtgacggggtgcagggccctgtggggcttcctggtcccgcgggacccccaggcgtggca
ggagaggatggagacaagggtgaggtgggcgaccctgggcagaagggaaccaaaggaaac
aagggtgagcatggccctcctggccctcctggtcccatcggtcctgtggggcagcctgga
gctgcgggagctgacggcgagcccggagcccgcggaccccagggacactttggagccaaa
ggtgacgaaggaacaagagggttcaatgggccccctggacccatcggcctacagggcctg
ccaggaccttttggggaaaagggagaaacaggagacgtggggcctatgggaccccctggc
cccccaggacctcgaggccccgctggacccaatggtgctgatggcccacaaggtccccct
ggaggtgtcggaaacttgggtccccctggagagaagggtgaaccaggggagtcggggtct
ccaggagtccagggtgagccgggcgtcaagggtccacgtggagagcgtggtgagaaagga
gagtctgggcaggcaggagaggctggaccaccagggcccaaaggccctacaggcgatgac
ggccccaaggggaaccctggtcccgttggctttcctggggaccctggcccccccggagaa
gctggcccaaggggccaggatggtgctaagggaagccaaggcgaggatggcgagccggga
cagcctggatcccccggccccaccggggagaacgggccccctggacctcttggaaagcgg
ggacccgctggcactcctggtccggagggacgacaaggagagaagggagccaagggggac
cctggtgctgtgggggccccaggaaagacgggccctgtgggccctgcaggcccagcaggg
aagcctggccccgatggtcttcgagggctccctggctcagtgggtcagcaaggccgccct
ggagccacaggccaggctgggcccccaggtcctgtgggacccccagggcttcctggcctc
cggggtgatgctggcgccaagggggagaagggtcatccaggcctcatcggactgattggg
ccgaccggagagcaaggcgagaagggtgaccgtggccttcctggccctcagggctcacct
ggacaaaagggagagacgggtatcccaggagcatctggtcctatcggtcctggaggacct
cctggcctgcctggaccgtccggccccaaaggagctaaaggagccacaggccccgctgga
cccaaaggagagaaaggtgttcagggccctccaggacacccgggtcccccgggcgaggtg
atccagccactgcccatccagatgcccaagaagacccggcgctctgtggacggaagcaaa
ctgatgcaggatgaggaggccacacccactggcggtgccccgggcagtcctgcaggactg
gaggagatcttcggttcactggactctctgcgggaggagatcgaacagatgaggaggccg
acagggacccaggacagccctgcccgcacctgccaggacttgaagctgtgccacccagag
cttcccgatggagagtactgggttgaccccaaccagggctgtgcccgggacgccttccgg
gtgttctgcaactttacagcaggaggggagacttgtgtcacacccagggatgacgtcaca
cagttctcctacgtggactctgaaggctccccagtgggcgtggtccagctcaccttcctg
cggctgctcagcgtctctgcccaccaggatgtttcctacccttgctctggggtatcccag
gacggtcccctgaaactccgaggggccaatgaggatgagctgagccctgagaccagccct
tacgtcaaggagttcagagatggctgtcagacccagcaaggccggacggtgttagaggtg
cgcacgcctgtgctggagcagctgcccgtgctggatgcttccttctcagacctgggggcc
cctacaagacggggaggggtgcttctggggcctgtctgcttcatgggctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   RGD (1)   
   VEGA (1)   
Protein sequence (13)   
   UniProt (1)   
   RefSeq(pep) (12)   
DNA sequence (13)   
   RefSeq(nuc) (13)   
Protein domain (5)   
   Pfam (5)   
All databases (43)   

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